miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21283 5' -45.7 NC_004778.3 + 19716 1.06 0.031003
Target:  5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66459 1.06 0.031003
Target:  5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66590 1.06 0.031003
Target:  5'- gUUCUCGAAAAGCGAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66524 0.95 0.126756
Target:  5'- gUUUUUGAAAAGCGAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 19843 0.91 0.211038
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99435 0.91 0.222931
Target:  5'- gUUCUCGAAAAGCGAGcGCUAUCUUa- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCaCGAUAGAAau -5'
21283 5' -45.7 NC_004778.3 + 66718 0.91 0.229088
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66652 0.91 0.229088
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 19998 0.91 0.229088
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUCUUUGg -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 122638 0.9 0.262053
Target:  5'- uUUCUCGAAAAGCGAGUGCUAUa---- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5'
21283 5' -45.7 NC_004778.3 + 122590 0.9 0.262053
Target:  5'- gUUCUCGAAAAGCGAGUGCUAUa---- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5'
21283 5' -45.7 NC_004778.3 + 122528 0.9 0.262053
Target:  5'- gUUCUCGAAAAGCGAGUGCUAUa---- -3'
miRNA:   3'- -AAGAGCUUUUCGCUCACGAUAgaaau -5'
21283 5' -45.7 NC_004778.3 + 99911 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99845 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 100043 0.86 0.412243
Target:  5'- gUCUguaccCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aAGA-----GCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 100101 0.85 0.422013
Target:  5'- ---cCGAAAAGCGAGUGCUAUUUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99969 0.85 0.422013
Target:  5'- ---cCGAAAAGCGAGUGCUAUUUUUAa -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 66855 0.81 0.662273
Target:  5'- ---cCGAAAAGCGAG-GCUAUCUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCaCGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 99771 0.8 0.684965
Target:  5'- ---cCGAAAAGCGAGUGUUAUUUUUAg -3'
miRNA:   3'- aagaGCUUUUCGCUCACGAUAGAAAU- -5'
21283 5' -45.7 NC_004778.3 + 122700 0.78 0.782924
Target:  5'- gUUCUCGAAAAaCaAGUGCUAUCUUUAg -3'
miRNA:   3'- -AAGAGCUUUUcGcUCACGAUAGAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.