miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21285 5' -52.5 NC_004778.3 + 98847 0.66 0.98332
Target:  5'- cGGAGCGCggcaCGUGCUCGuugaagaacuguuGCGCGGc- -3'
miRNA:   3'- -UCUUGCGg---GCAUGAGCuu-----------UGCGCUcc -5'
21285 5' -52.5 NC_004778.3 + 58271 0.66 0.982532
Target:  5'- cGGcGCGUuuaacUCGUgggGCUCGAGGCGCGGcGGc -3'
miRNA:   3'- -UCuUGCG-----GGCA---UGAGCUUUGCGCU-CC- -5'
21285 5' -52.5 NC_004778.3 + 34429 0.66 0.982532
Target:  5'- cGGcgUGCCCGUACUgcuguacaCGGGcacgcugcGCGuCGAGGa -3'
miRNA:   3'- -UCuuGCGGGCAUGA--------GCUU--------UGC-GCUCC- -5'
21285 5' -52.5 NC_004778.3 + 99785 0.66 0.98044
Target:  5'- gAGAACGUauGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 122819 0.66 0.98044
Target:  5'- cGAACaUCUGUACUUGGAAaGCGGGa -3'
miRNA:   3'- uCUUGcGGGCAUGAGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 36242 0.66 0.978167
Target:  5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3'
miRNA:   3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5'
21285 5' -52.5 NC_004778.3 + 51358 0.66 0.978167
Target:  5'- aAGGACuuGCCCGccaACUCGAuACGUuuGGg -3'
miRNA:   3'- -UCUUG--CGGGCa--UGAGCUuUGCGcuCC- -5'
21285 5' -52.5 NC_004778.3 + 74833 0.66 0.975704
Target:  5'- --uGCGCCCGUAgUCGGuGGCGcCGAu- -3'
miRNA:   3'- ucuUGCGGGCAUgAGCU-UUGC-GCUcc -5'
21285 5' -52.5 NC_004778.3 + 36756 0.66 0.973044
Target:  5'- cAGAaugACGCCCG-ACUCGAAcgGCaccguGUGAGa -3'
miRNA:   3'- -UCU---UGCGGGCaUGAGCUU--UG-----CGCUCc -5'
21285 5' -52.5 NC_004778.3 + 99410 0.66 0.973044
Target:  5'- ---uCGUC-GUACUCGGAAaGCGAGGu -3'
miRNA:   3'- ucuuGCGGgCAUGAGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 27962 0.67 0.967104
Target:  5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3'
miRNA:   3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 21273 0.67 0.96381
Target:  5'- cAGAugGCCCGUGaugCGca--GCGAGu -3'
miRNA:   3'- -UCUugCGGGCAUga-GCuuugCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 19992 0.67 0.960293
Target:  5'- gGGcACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCuUGCGGGCAUGaGCUUUgCGCUCc -5'
21285 5' -52.5 NC_004778.3 + 61950 0.67 0.956546
Target:  5'- aAGaAACGCCgCGUuCUCGAAcAUGuCGGGGc -3'
miRNA:   3'- -UC-UUGCGG-GCAuGAGCUU-UGC-GCUCC- -5'
21285 5' -52.5 NC_004778.3 + 20200 0.67 0.956546
Target:  5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 70379 0.67 0.956546
Target:  5'- -uGACGCCCGUGCUguccGGCGCuuGGg -3'
miRNA:   3'- ucUUGCGGGCAUGAgcu-UUGCGcuCC- -5'
21285 5' -52.5 NC_004778.3 + 111766 0.68 0.948348
Target:  5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3'
miRNA:   3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5'
21285 5' -52.5 NC_004778.3 + 23990 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 23793 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5'
21285 5' -52.5 NC_004778.3 + 24188 0.68 0.934235
Target:  5'- cGGcAACGCUCGUAC-CaGAAAaGCGGGGu -3'
miRNA:   3'- -UC-UUGCGGGCAUGaG-CUUUgCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.