Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 125099 | 0.76 | 0.552671 |
Target: 5'- gAGAACGUCUGUACUCaAAA-GCGGGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 124977 | 0.73 | 0.738138 |
Target: 5'- cGGAACGUCUGUACUUaAAA-GCGGGGu -3' miRNA: 3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 124492 | 0.7 | 0.871253 |
Target: 5'- aAGGcccGCGCCCGUGCgUCGAGucACGU-AGGc -3' miRNA: 3'- -UCU---UGCGGGCAUG-AGCUU--UGCGcUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122880 | 0.72 | 0.7675 |
Target: 5'- gAGAACaUCUGUACUUGGAAaGCGGGGu -3' miRNA: 3'- -UCUUGcGGGCAUGAGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122833 | 0.79 | 0.435894 |
Target: 5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122819 | 0.66 | 0.98044 |
Target: 5'- cGAACaUCUGUACUUGGAAaGCGGGa -3' miRNA: 3'- uCUUGcGGGCAUGAGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122723 | 0.79 | 0.435894 |
Target: 5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122661 | 0.7 | 0.878622 |
Target: 5'- gAGAACaCCCGUuCcCGAAAaGCGAGGu -3' miRNA: 3'- -UCUUGcGGGCAuGaGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122409 | 0.69 | 0.899341 |
Target: 5'- -cAACaaUCGUACUCGAAAaGCGAGGu -3' miRNA: 3'- ucUUGcgGGCAUGAGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 122249 | 0.71 | 0.831199 |
Target: 5'- -cAACGCUCGcACUUGAAAaGCGGGGu -3' miRNA: 3'- ucUUGCGGGCaUGAGCUUUgCGCUCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 116008 | 0.7 | 0.878622 |
Target: 5'- gGGggUGCCUG-GCUUGAuguacauGCGCGAGu -3' miRNA: 3'- -UCuuGCGGGCaUGAGCUu------UGCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 111766 | 0.68 | 0.948348 |
Target: 5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3' miRNA: 3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 107667 | 0.68 | 0.934235 |
Target: 5'- -cGACGCCCGUgucGCgcgaCGAAaccuuGCGCGuGGa -3' miRNA: 3'- ucUUGCGGGCA---UGa---GCUU-----UGCGCuCC- -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 105673 | 0.7 | 0.89267 |
Target: 5'- cGAACGUgagcuuuuuaCUGUACUCGGAauGCGCGAc- -3' miRNA: 3'- uCUUGCG----------GGCAUGAGCUU--UGCGCUcc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 100049 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 99983 | 0.73 | 0.757825 |
Target: 5'- gAGAACGUuuGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 99917 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 99851 | 0.76 | 0.60424 |
Target: 5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 99785 | 0.66 | 0.98044 |
Target: 5'- gAGAACGUauGUACcCGAAAaGCGAGu -3' miRNA: 3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5' |
|||||||
21285 | 5' | -52.5 | NC_004778.3 | + | 99719 | 0.69 | 0.899341 |
Target: 5'- gAGAACGUCUGUACcCGAAAaaCGAGu -3' miRNA: 3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home