miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21287 5' -52.5 NC_004778.3 + 36756 0.66 0.973044
Target:  5'- cAGAaugACGCCCG-ACUCGAAcgGCaccguGUGAGa -3'
miRNA:   3'- -UCU---UGCGGGCaUGAGCUU--UG-----CGCUCc -5'
21287 5' -52.5 NC_004778.3 + 42669 0.69 0.899341
Target:  5'- uGAGCaGCCCGUugUCGGGcACGcCGAc- -3'
miRNA:   3'- uCUUG-CGGGCAugAGCUU-UGC-GCUcc -5'
21287 5' -52.5 NC_004778.3 + 45134 0.71 0.847837
Target:  5'- gAGAGCGaCCCGgcCgcgCGAAAUGCGcuGGa -3'
miRNA:   3'- -UCUUGC-GGGCauGa--GCUUUGCGCu-CC- -5'
21287 5' -52.5 NC_004778.3 + 51358 0.66 0.978167
Target:  5'- aAGGACuuGCCCGccaACUCGAuACGUuuGGg -3'
miRNA:   3'- -UCUUG--CGGGCa--UGAGCUuUGCGcuCC- -5'
21287 5' -52.5 NC_004778.3 + 58271 0.66 0.982532
Target:  5'- cGGcGCGUuuaacUCGUgggGCUCGAGGCGCGGcGGc -3'
miRNA:   3'- -UCuUGCG-----GGCA---UGAGCUUUGCGCU-CC- -5'
21287 5' -52.5 NC_004778.3 + 61950 0.67 0.956546
Target:  5'- aAGaAACGCCgCGUuCUCGAAcAUGuCGGGGc -3'
miRNA:   3'- -UC-UUGCGG-GCAuGAGCUU-UGC-GCUCC- -5'
21287 5' -52.5 NC_004778.3 + 66593 0.94 0.056004
Target:  5'- gAGAACGCUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 66646 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 66712 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 66722 0.77 0.522352
Target:  5'- -aGACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 66778 0.69 0.899341
Target:  5'- gAGAACGUCUGUACgCGAAAaaCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5'
21287 5' -52.5 NC_004778.3 + 66841 0.71 0.839616
Target:  5'- aAGAACGUauGUACcCGAAAaGCGAGGc -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 70379 0.67 0.956546
Target:  5'- -uGACGCCCGUGCUguccGGCGCuuGGg -3'
miRNA:   3'- ucUUGCGGGCAUGAgcu-UUGCGcuCC- -5'
21287 5' -52.5 NC_004778.3 + 74833 0.66 0.975704
Target:  5'- --uGCGCCCGUAgUCGGuGGCGcCGAu- -3'
miRNA:   3'- ucuUGCGGGCAUgAGCU-UUGC-GCUcc -5'
21287 5' -52.5 NC_004778.3 + 94875 0.72 0.77705
Target:  5'- -aGACGCCCGUGCUgGGAuUGC-AGGa -3'
miRNA:   3'- ucUUGCGGGCAUGAgCUUuGCGcUCC- -5'
21287 5' -52.5 NC_004778.3 + 95908 0.71 0.855855
Target:  5'- cGGAuaGCGCCCGgcgcgGCUCcaaaucuuGAugGCGGGGc -3'
miRNA:   3'- -UCU--UGCGGGCa----UGAGc-------UUugCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 98847 0.66 0.98332
Target:  5'- cGGAGCGCggcaCGUGCUCGuugaagaacuguuGCGCGGc- -3'
miRNA:   3'- -UCUUGCGg---GCAUGAGCuu-----------UGCGCUcc -5'
21287 5' -52.5 NC_004778.3 + 99237 0.79 0.426796
Target:  5'- gAGAACGCUCGUAUUUGuaaaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCuuugCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 99301 0.72 0.795737
Target:  5'- gAGAACGCUCGUGCcCuAAAaGCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGcUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 99347 0.85 0.206367
Target:  5'- gAGAACGCUCGUGCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.