miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21287 5' -52.5 NC_004778.3 + 125099 0.76 0.552671
Target:  5'- gAGAACGUCUGUACUCaAAA-GCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 124977 0.73 0.738138
Target:  5'- cGGAACGUCUGUACUUaAAA-GCGGGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGcUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 124492 0.7 0.871253
Target:  5'- aAGGcccGCGCCCGUGCgUCGAGucACGU-AGGc -3'
miRNA:   3'- -UCU---UGCGGGCAUG-AGCUU--UGCGcUCC- -5'
21287 5' -52.5 NC_004778.3 + 122880 0.72 0.7675
Target:  5'- gAGAACaUCUGUACUUGGAAaGCGGGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 122833 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 122819 0.66 0.98044
Target:  5'- cGAACaUCUGUACUUGGAAaGCGGGa -3'
miRNA:   3'- uCUUGcGGGCAUGAGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 122723 0.79 0.435894
Target:  5'- gAGAACaCCCGUACcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAUGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 122661 0.7 0.878622
Target:  5'- gAGAACaCCCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAuGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 122409 0.69 0.899341
Target:  5'- -cAACaaUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGcgGGCAUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 122249 0.71 0.831199
Target:  5'- -cAACGCUCGcACUUGAAAaGCGGGGu -3'
miRNA:   3'- ucUUGCGGGCaUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 116008 0.7 0.878622
Target:  5'- gGGggUGCCUG-GCUUGAuguacauGCGCGAGu -3'
miRNA:   3'- -UCuuGCGGGCaUGAGCUu------UGCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 111766 0.68 0.948348
Target:  5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3'
miRNA:   3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5'
21287 5' -52.5 NC_004778.3 + 107667 0.68 0.934235
Target:  5'- -cGACGCCCGUgucGCgcgaCGAAaccuuGCGCGuGGa -3'
miRNA:   3'- ucUUGCGGGCA---UGa---GCUU-----UGCGCuCC- -5'
21287 5' -52.5 NC_004778.3 + 105673 0.7 0.89267
Target:  5'- cGAACGUgagcuuuuuaCUGUACUCGGAauGCGCGAc- -3'
miRNA:   3'- uCUUGCG----------GGCAUGAGCUU--UGCGCUcc -5'
21287 5' -52.5 NC_004778.3 + 100049 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 99983 0.73 0.757825
Target:  5'- gAGAACGUuuGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 99917 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 99851 0.76 0.60424
Target:  5'- gAGAACGUCUGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 99785 0.66 0.98044
Target:  5'- gAGAACGUauGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 99719 0.69 0.899341
Target:  5'- gAGAACGUCUGUACcCGAAAaaCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.