miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21287 5' -52.5 NC_004778.3 + 58271 0.66 0.982532
Target:  5'- cGGcGCGUuuaacUCGUgggGCUCGAGGCGCGGcGGc -3'
miRNA:   3'- -UCuUGCG-----GGCA---UGAGCUUUGCGCU-CC- -5'
21287 5' -52.5 NC_004778.3 + 31413 0.72 0.81381
Target:  5'- cGAACGCaaGUuuCUCG--GCGCGAGGu -3'
miRNA:   3'- uCUUGCGggCAu-GAGCuuUGCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 99983 0.73 0.757825
Target:  5'- gAGAACGUuuGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 66593 0.94 0.056004
Target:  5'- gAGAACGCUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGCGGGCAUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 36756 0.66 0.973044
Target:  5'- cAGAaugACGCCCG-ACUCGAAcgGCaccguGUGAGa -3'
miRNA:   3'- -UCU---UGCGGGCaUGAGCUU--UG-----CGCUCc -5'
21287 5' -52.5 NC_004778.3 + 27962 0.67 0.967104
Target:  5'- cGAGCgcgacaagcgGCCCGUGCaugCGGugcAGCGCGGGc -3'
miRNA:   3'- uCUUG----------CGGGCAUGa--GCU---UUGCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 70379 0.67 0.956546
Target:  5'- -uGACGCCCGUGCUguccGGCGCuuGGg -3'
miRNA:   3'- ucUUGCGGGCAUGAgcu-UUGCGcuCC- -5'
21287 5' -52.5 NC_004778.3 + 111766 0.68 0.948348
Target:  5'- -aAACGCCCauugcGUACUCGgcGCGCGu-- -3'
miRNA:   3'- ucUUGCGGG-----CAUGAGCuuUGCGCucc -5'
21287 5' -52.5 NC_004778.3 + 42669 0.69 0.899341
Target:  5'- uGAGCaGCCCGUugUCGGGcACGcCGAc- -3'
miRNA:   3'- uCUUG-CGGGCAugAGCUU-UGC-GCUcc -5'
21287 5' -52.5 NC_004778.3 + 122249 0.71 0.831199
Target:  5'- -cAACGCUCGcACUUGAAAaGCGGGGu -3'
miRNA:   3'- ucUUGCGGGCaUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 116008 0.7 0.878622
Target:  5'- gGGggUGCCUG-GCUUGAuguacauGCGCGAGu -3'
miRNA:   3'- -UCuuGCGGGCaUGAGCUu------UGCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 122409 0.69 0.899341
Target:  5'- -cAACaaUCGUACUCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGcgGGCAUGAGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 99785 0.66 0.98044
Target:  5'- gAGAACGUauGUACcCGAAAaGCGAGu -3'
miRNA:   3'- -UCUUGCGggCAUGaGCUUUgCGCUCc -5'
21287 5' -52.5 NC_004778.3 + 122661 0.7 0.878622
Target:  5'- gAGAACaCCCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- -UCUUGcGGGCAuGaGCUUUgCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 36242 0.66 0.978167
Target:  5'- uGAACGCUCG-GCUCuu-GCGCGAu- -3'
miRNA:   3'- uCUUGCGGGCaUGAGcuuUGCGCUcc -5'
21287 5' -52.5 NC_004778.3 + 99719 0.69 0.899341
Target:  5'- gAGAACGUCUGUACcCGAAAaaCGAGu -3'
miRNA:   3'- -UCUUGCGGGCAUGaGCUUUgcGCUCc -5'
21287 5' -52.5 NC_004778.3 + 95908 0.71 0.855855
Target:  5'- cGGAuaGCGCCCGgcgcgGCUCcaaaucuuGAugGCGGGGc -3'
miRNA:   3'- -UCU--UGCGGGCa----UGAGc-------UUugCGCUCC- -5'
21287 5' -52.5 NC_004778.3 + 94875 0.72 0.77705
Target:  5'- -aGACGCCCGUGCUgGGAuUGC-AGGa -3'
miRNA:   3'- ucUUGCGGGCAUGAgCUUuGCGcUCC- -5'
21287 5' -52.5 NC_004778.3 + 51358 0.66 0.978167
Target:  5'- aAGGACuuGCCCGccaACUCGAuACGUuuGGg -3'
miRNA:   3'- -UCUUG--CGGGCa--UGAGCUuUGCGcuCC- -5'
21287 5' -52.5 NC_004778.3 + 20200 0.67 0.956546
Target:  5'- -uAACGCUCGUuCcCGAAAaGCGAGGu -3'
miRNA:   3'- ucUUGCGGGCAuGaGCUUUgCGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.