miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 17604 0.74 0.412589
Target:  5'- uGCGCGAGauUUCGCaguugaaacgGCGggGCCGCAGCACg -3'
miRNA:   3'- cCGCGUUC--AGGCG----------UGU--UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 20750 0.71 0.545983
Target:  5'- uGCGCAacGGUCUGCgcuuggGCAACUGCacggGGCGCg -3'
miRNA:   3'- cCGCGU--UCAGGCG------UGUUGGCG----UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 21248 0.67 0.779214
Target:  5'- cGUGCA-GUCCGCGCGGCagGUugAGCAg -3'
miRNA:   3'- cCGCGUuCAGGCGUGUUGg-CG--UCGUg -5'
21299 5' -56.5 NC_004778.3 + 21294 0.66 0.832887
Target:  5'- cGGCGCuc--CCGaCGCcGCagaGCGGCACg -3'
miRNA:   3'- -CCGCGuucaGGC-GUGuUGg--CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 23541 0.66 0.832887
Target:  5'- cGCGCAAGUauaUGcCGCAGUCGUAGCGa -3'
miRNA:   3'- cCGCGUUCAg--GC-GUGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 25150 0.67 0.815657
Target:  5'- cGGCGCGugcaaacCUGCACGuucUUGCGGCGCa -3'
miRNA:   3'- -CCGCGUuca----GGCGUGUu--GGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 25299 0.7 0.607498
Target:  5'- cGUGCAGGUuuGCACGcGCCGCAagaacgugaaGCAa -3'
miRNA:   3'- cCGCGUUCAggCGUGU-UGGCGU----------CGUg -5'
21299 5' -56.5 NC_004778.3 + 25670 0.66 0.865036
Target:  5'- cGGCGUguGGGUCaacgGCACGcuacaauccgccGCCGUcGCGCa -3'
miRNA:   3'- -CCGCG--UUCAGg---CGUGU------------UGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 25790 0.68 0.72068
Target:  5'- cGCGCAAGcUUGCACAAUCauuuGCGGCGa -3'
miRNA:   3'- cCGCGUUCaGGCGUGUUGG----CGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 25876 0.66 0.832043
Target:  5'- gGGUGUguGcCgGCGCGACCGUgggcgcuGGCACg -3'
miRNA:   3'- -CCGCGuuCaGgCGUGUUGGCG-------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 26560 0.69 0.673791
Target:  5'- aGCGU-GGUgCGCACGGCCGCAuaguugucgucguucGCACc -3'
miRNA:   3'- cCGCGuUCAgGCGUGUUGGCGU---------------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 26723 0.72 0.535903
Target:  5'- uGCGCAAaaCCGCcgcaaacgccGCGGCCuGCAGCGCg -3'
miRNA:   3'- cCGCGUUcaGGCG----------UGUUGG-CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 26898 0.7 0.597155
Target:  5'- --aGCGAGUucCCGCGCugcaGGCCGCGGCGu -3'
miRNA:   3'- ccgCGUUCA--GGCGUG----UUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 26980 0.67 0.801377
Target:  5'- cGCGUAGGagccaugucaaaacCCGCGCGGCC-CAGCAa -3'
miRNA:   3'- cCGCGUUCa-------------GGCGUGUUGGcGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 27960 0.68 0.740607
Target:  5'- aGCGCGacaagcGGcCCGUGCAugCgguGCAGCGCg -3'
miRNA:   3'- cCGCGU------UCaGGCGUGUugG---CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 27967 0.67 0.769741
Target:  5'- cGUGCAGGcgUGCGCu-UCGCAGCGCg -3'
miRNA:   3'- cCGCGUUCagGCGUGuuGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 28806 0.67 0.769741
Target:  5'- -uCGCAAGgaaaCGcCGCGGCCGC-GCACa -3'
miRNA:   3'- ccGCGUUCag--GC-GUGUUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 28899 0.67 0.806782
Target:  5'- cGGCGCu-GUuuGCGCGugCGCGaugaaCGCg -3'
miRNA:   3'- -CCGCGuuCAggCGUGUugGCGUc----GUG- -5'
21299 5' -56.5 NC_004778.3 + 28969 0.7 0.638606
Target:  5'- uGCGCuaaUgUGCGCGGCCGCGGCGu -3'
miRNA:   3'- cCGCGuucAgGCGUGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 29250 0.7 0.648976
Target:  5'- uGGCGauuGGGUCCGCuCcGCCgagGCGGCGCc -3'
miRNA:   3'- -CCGCg--UUCAGGCGuGuUGG---CGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.