miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 1720 0.69 0.700442
Target:  5'- uGCGUAuaaacAGUCCGCGCucaAACaCGguGUACg -3'
miRNA:   3'- cCGCGU-----UCAGGCGUG---UUG-GCguCGUG- -5'
21299 5' -56.5 NC_004778.3 + 1900 0.67 0.806782
Target:  5'- cGCuGCAGGUuuGauUAUAACCGcCGGCGCu -3'
miRNA:   3'- cCG-CGUUCAggC--GUGUUGGC-GUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 1981 0.67 0.806782
Target:  5'- cGUGCAcAGcUCGUGCcGCUGCGGCGCa -3'
miRNA:   3'- cCGCGU-UCaGGCGUGuUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 2548 0.66 0.841224
Target:  5'- gGGCGCGGGcacgucggccaCCGCGCGGaaGUuucGGCACa -3'
miRNA:   3'- -CCGCGUUCa----------GGCGUGUUggCG---UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 4841 0.69 0.69023
Target:  5'- uGGCaCGAGuucacUCCGUGCGGCCGCguuaucgacGGCACc -3'
miRNA:   3'- -CCGcGUUC-----AGGCGUGUUGGCG---------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 5255 0.72 0.525888
Target:  5'- aGCGCGAG-CUGCACGuUCGC-GCACa -3'
miRNA:   3'- cCGCGUUCaGGCGUGUuGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 7364 0.66 0.841224
Target:  5'- uGCGCGug-CCGguCGACCGC-GUACc -3'
miRNA:   3'- cCGCGUucaGGCguGUUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 8487 0.66 0.841224
Target:  5'- aGGCGCGu-UCCGCA--AgCGCGGCGu -3'
miRNA:   3'- -CCGCGUucAGGCGUguUgGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 9034 0.69 0.659332
Target:  5'- aGGCGCcg--UCGCACAaguuaACCGCcGCGCu -3'
miRNA:   3'- -CCGCGuucaGGCGUGU-----UGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 9436 0.68 0.750428
Target:  5'- cGCGCAcGUUgGaCACGGCCGUcgucucggcGGCGCa -3'
miRNA:   3'- cCGCGUuCAGgC-GUGUUGGCG---------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 9698 0.66 0.830349
Target:  5'- cGGCGCGGcGUCguguuccaaaacggCGCGCAaaucgucgauacGCgCGCGGUACg -3'
miRNA:   3'- -CCGCGUU-CAG--------------GCGUGU------------UG-GCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 9908 0.69 0.710596
Target:  5'- aGGCuGCAAGU--GCGCAAUCGCGGaGCg -3'
miRNA:   3'- -CCG-CGUUCAggCGUGUUGGCGUCgUG- -5'
21299 5' -56.5 NC_004778.3 + 10898 0.73 0.476989
Target:  5'- cGGCGCGcacacggcAGcCCGCGgAGCgCGCAGCGa -3'
miRNA:   3'- -CCGCGU--------UCaGGCGUgUUG-GCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 11931 0.76 0.307666
Target:  5'- cGGCGCGuuuugcuuuaacgGGUCCGCGCAacuccgccugucGCCGCAuguugagacgguGCGCa -3'
miRNA:   3'- -CCGCGU-------------UCAGGCGUGU------------UGGCGU------------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 12241 0.71 0.575532
Target:  5'- uGCGCAg--CCGCAUAGCUGCuaaggcgGGCGCg -3'
miRNA:   3'- cCGCGUucaGGCGUGUUGGCG-------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 14689 0.7 0.597155
Target:  5'- cGCGCGGucGUCCgGCACGACgugaCGCAcGCGCg -3'
miRNA:   3'- cCGCGUU--CAGG-CGUGUUG----GCGU-CGUG- -5'
21299 5' -56.5 NC_004778.3 + 15449 0.66 0.864272
Target:  5'- aGCGCcgccUCCGCGCGACCacgccaaagugcuGCcGCGCa -3'
miRNA:   3'- cCGCGuuc-AGGCGUGUUGG-------------CGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 15858 0.68 0.72068
Target:  5'- uGGCGCA--UCuCGCGCA---GCAGCGCg -3'
miRNA:   3'- -CCGCGUucAG-GCGUGUuggCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 16994 0.7 0.607498
Target:  5'- uGCGUAaacccuaacacAGUuuGCACGugCGCGGCGu -3'
miRNA:   3'- cCGCGU-----------UCAggCGUGUugGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 17224 0.66 0.856521
Target:  5'- uGCGCGAGUUCGUggaggaaACGgGCCGCuuuuuucacAGCGCc -3'
miRNA:   3'- cCGCGUUCAGGCG-------UGU-UGGCG---------UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.