miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 15449 0.66 0.864272
Target:  5'- aGCGCcgccUCCGCGCGACCacgccaaagugcuGCcGCGCa -3'
miRNA:   3'- cCGCGuuc-AGGCGUGUUGG-------------CGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 98362 0.66 0.857305
Target:  5'- cGCGCA---CCGCGCccGGgCGCAGCAa -3'
miRNA:   3'- cCGCGUucaGGCGUG--UUgGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 51430 0.66 0.865036
Target:  5'- gGGCGCAuGUCCaGCAaagaCGCAGgAUu -3'
miRNA:   3'- -CCGCGUuCAGG-CGUguugGCGUCgUG- -5'
21299 5' -56.5 NC_004778.3 + 125954 0.66 0.857305
Target:  5'- cGCGUucagGAGgaaaaggCgGCGgAGCUGCAGCGCa -3'
miRNA:   3'- cCGCG----UUCa------GgCGUgUUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 23541 0.66 0.832887
Target:  5'- cGCGCAAGUauaUGcCGCAGUCGUAGCGa -3'
miRNA:   3'- cCGCGUUCAg--GC-GUGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 129299 0.66 0.849366
Target:  5'- uGGCGCuguacgCCGCGgAcgcGCCGCAGUu- -3'
miRNA:   3'- -CCGCGuuca--GGCGUgU---UGGCGUCGug -5'
21299 5' -56.5 NC_004778.3 + 38141 0.66 0.865036
Target:  5'- aGCGCAGGcCCGCugcGCCGCucGaCACc -3'
miRNA:   3'- cCGCGUUCaGGCGuguUGGCGu-C-GUG- -5'
21299 5' -56.5 NC_004778.3 + 7364 0.66 0.841224
Target:  5'- uGCGCGug-CCGguCGACCGC-GUACc -3'
miRNA:   3'- cCGCGUucaGGCguGUUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 107730 0.66 0.824362
Target:  5'- -aCGCAuuguGgaaccugCUGCGCuugGACCGCAGCACc -3'
miRNA:   3'- ccGCGUu---Ca------GGCGUG---UUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 38181 0.66 0.824362
Target:  5'- cGCGCcuAGU-CGCAuCAAgUCGCGGCACa -3'
miRNA:   3'- cCGCGu-UCAgGCGU-GUU-GGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 17224 0.66 0.856521
Target:  5'- uGCGCGAGUUCGUggaggaaACGgGCCGCuuuuuucacAGCGCc -3'
miRNA:   3'- cCGCGUUCAGGCG-------UGU-UGGCG---------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 97407 0.66 0.832043
Target:  5'- cGCGCAAGgaagCCGC-CGGuucuaauCUGCAGCGa -3'
miRNA:   3'- cCGCGUUCa---GGCGuGUU-------GGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 129453 0.66 0.865036
Target:  5'- cGGCGC--GUCCGCggcguACAGCgC-CAGCAUu -3'
miRNA:   3'- -CCGCGuuCAGGCG-----UGUUG-GcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 38304 0.66 0.857305
Target:  5'- cGCGCAcgcGaCCGCGCG-CCG-AGCACu -3'
miRNA:   3'- cCGCGUu--CaGGCGUGUuGGCgUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 86600 0.66 0.865036
Target:  5'- aGCGCGuacauGUauaugCUGCGCAACaCGuCGGCGCg -3'
miRNA:   3'- cCGCGUu----CA-----GGCGUGUUG-GC-GUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 8487 0.66 0.841224
Target:  5'- aGGCGCGu-UCCGCA--AgCGCGGCGu -3'
miRNA:   3'- -CCGCGUucAGGCGUguUgGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 38453 0.66 0.865036
Target:  5'- cGGCGCGcGGUCgCGUGCG--CGCuGGCGCa -3'
miRNA:   3'- -CCGCGU-UCAG-GCGUGUugGCG-UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 118786 0.66 0.832887
Target:  5'- cGGCGCGgccGG-CgCGCACAauuacgagGCCcaGCGGCGCc -3'
miRNA:   3'- -CCGCGU---UCaG-GCGUGU--------UGG--CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 25876 0.66 0.832043
Target:  5'- gGGUGUguGcCgGCGCGACCGUgggcgcuGGCACg -3'
miRNA:   3'- -CCGCGuuCaGgCGUGUUGGCG-------UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 25670 0.66 0.865036
Target:  5'- cGGCGUguGGGUCaacgGCACGcuacaauccgccGCCGUcGCGCa -3'
miRNA:   3'- -CCGCG--UUCAGg---CGUGU------------UGGCGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.