miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 33221 1.11 0.001424
Target:  5'- gGGCGCAAGUCCGCACAACCGCAGCACu -3'
miRNA:   3'- -CCGCGUUCAGGCGUGUUGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 48861 0.81 0.158174
Target:  5'- uGCGCAguuGGUCgCGCACGGCCuugGCGGCACg -3'
miRNA:   3'- cCGCGU---UCAG-GCGUGUUGG---CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 108610 0.81 0.166543
Target:  5'- aGCGCAGcuGUCCGUACAAcaaauacagcCCGCGGCGCa -3'
miRNA:   3'- cCGCGUU--CAGGCGUGUU----------GGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 81907 0.79 0.219983
Target:  5'- cGGCGCAgucGGUCCGC-CAcCCGCcGCGCc -3'
miRNA:   3'- -CCGCGU---UCAGGCGuGUuGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34353 0.78 0.231148
Target:  5'- uGGCGCAAG-CgGCACAacaGCCaCAGCACg -3'
miRNA:   3'- -CCGCGUUCaGgCGUGU---UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 32835 0.78 0.242786
Target:  5'- cGGCGUAGa--CGCGCAgcuGCCGCGGCGCg -3'
miRNA:   3'- -CCGCGUUcagGCGUGU---UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34626 0.76 0.293563
Target:  5'- aGGCGCAAGaCCGCAUccACCGCAugggccaaaagaaGCGCa -3'
miRNA:   3'- -CCGCGUUCaGGCGUGu-UGGCGU-------------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 33518 0.76 0.301256
Target:  5'- cGGCGCGucGUCCGCgACGucgcCCGCGGCGa -3'
miRNA:   3'- -CCGCGUu-CAGGCG-UGUu---GGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 11931 0.76 0.307666
Target:  5'- cGGCGCGuuuugcuuuaacgGGUCCGCGCAacuccgccugucGCCGCAuguugagacgguGCGCa -3'
miRNA:   3'- -CCGCGU-------------UCAGGCGUGU------------UGGCGU------------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 45623 0.76 0.315641
Target:  5'- cGCGCGAGU-UGCcCGACCGCGGCAg -3'
miRNA:   3'- cCGCGUUCAgGCGuGUUGGCGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 120966 0.75 0.338179
Target:  5'- gGGCGCGGG-CCGCGCccgcuGCCcCGGCGCc -3'
miRNA:   3'- -CCGCGUUCaGGCGUGu----UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 49310 0.75 0.345947
Target:  5'- cGGCGCGgucauuggacgcGGcgCCGCACAACgugUGCGGCACc -3'
miRNA:   3'- -CCGCGU------------UCa-GGCGUGUUG---GCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 88676 0.75 0.361056
Target:  5'- uGGCGCAauuggacGGgaugucgCCGCGCAGCaaGCGGCGCg -3'
miRNA:   3'- -CCGCGU-------UCa------GGCGUGUUGg-CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 61506 0.75 0.370012
Target:  5'- cGGCGCc-GUCCGCACAugaagccgaACCuGCGGCGu -3'
miRNA:   3'- -CCGCGuuCAGGCGUGU---------UGG-CGUCGUg -5'
21299 5' -56.5 NC_004778.3 + 33447 0.75 0.370012
Target:  5'- cGGCGCGAaaagcgcggccGUCCGCACGGCgGC-GUGCu -3'
miRNA:   3'- -CCGCGUU-----------CAGGCGUGUUGgCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34026 0.75 0.370012
Target:  5'- aGCGCAaaaagacggaAGUCaCGCucgACAuACCGCAGCACa -3'
miRNA:   3'- cCGCGU----------UCAG-GCG---UGU-UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 71052 0.75 0.378283
Target:  5'- -uCGCGAGgCCGCGucCAGCCGCuGCACa -3'
miRNA:   3'- ccGCGUUCaGGCGU--GUUGGCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 108831 0.74 0.403833
Target:  5'- cGGCGCcuucgGAGUCgGCGuaguagccuuCAACCGCgAGCGCg -3'
miRNA:   3'- -CCGCG-----UUCAGgCGU----------GUUGGCG-UCGUG- -5'
21299 5' -56.5 NC_004778.3 + 121601 0.74 0.403833
Target:  5'- aGGCGCGGGuUCUGCuGCAGCgCGCGGUccACg -3'
miRNA:   3'- -CCGCGUUC-AGGCG-UGUUG-GCGUCG--UG- -5'
21299 5' -56.5 NC_004778.3 + 34646 0.74 0.407321
Target:  5'- aGCGCGAGUCgGCgGCGuuaaacugguucucgACCGCGGUGCg -3'
miRNA:   3'- cCGCGUUCAGgCG-UGU---------------UGGCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.