miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21299 5' -56.5 NC_004778.3 + 90564 0.7 0.597155
Target:  5'- aGCGCucG-CCGC-CGAgCGCAGCGCc -3'
miRNA:   3'- cCGCGuuCaGGCGuGUUgGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 26723 0.72 0.535903
Target:  5'- uGCGCAAaaCCGCcgcaaacgccGCGGCCuGCAGCGCg -3'
miRNA:   3'- cCGCGUUcaGGCG----------UGUUGG-CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 43121 0.71 0.545983
Target:  5'- uGCGCAAGcgcUUCG-ACGgcGCCGCGGCGCg -3'
miRNA:   3'- cCGCGUUC---AGGCgUGU--UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 95769 0.71 0.545983
Target:  5'- gGGCGCua-UCCGCGCG---GCAGCGCg -3'
miRNA:   3'- -CCGCGuucAGGCGUGUuggCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 89896 0.71 0.555106
Target:  5'- gGGCGCAAGcggcuUgCGCGCGuuguuguaaaaauGCUGCAGUGCa -3'
miRNA:   3'- -CCGCGUUC-----AgGCGUGU-------------UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 108422 0.71 0.556123
Target:  5'- cGGCGCAGGUggaCGCGCuggugcGCCGCGGg-- -3'
miRNA:   3'- -CCGCGUUCAg--GCGUGu-----UGGCGUCgug -5'
21299 5' -56.5 NC_004778.3 + 52989 0.71 0.566316
Target:  5'- uGGcCGCAGGccCCGcCGCAACCGCcGcCACa -3'
miRNA:   3'- -CC-GCGUUCa-GGC-GUGUUGGCGuC-GUG- -5'
21299 5' -56.5 NC_004778.3 + 56700 0.71 0.576558
Target:  5'- cGGCGCAGcGaCCGCACGAUCaauguuaacaCAGCGCa -3'
miRNA:   3'- -CCGCGUU-CaGGCGUGUUGGc---------GUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 61626 0.71 0.58684
Target:  5'- aGCGUuuGgcgCCGCGCAGCCaGCGcGCGCc -3'
miRNA:   3'- cCGCGuuCa--GGCGUGUUGG-CGU-CGUG- -5'
21299 5' -56.5 NC_004778.3 + 112390 0.73 0.476989
Target:  5'- aGCGCGcGGU-CGCGCAGCUuagGCGGCACg -3'
miRNA:   3'- cCGCGU-UCAgGCGUGUUGG---CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34168 0.74 0.421461
Target:  5'- cGGCGaCAAG-CUGCGCAGCaUGCAGgACg -3'
miRNA:   3'- -CCGC-GUUCaGGCGUGUUG-GCGUCgUG- -5'
21299 5' -56.5 NC_004778.3 + 121601 0.74 0.403833
Target:  5'- aGGCGCGGGuUCUGCuGCAGCgCGCGGUccACg -3'
miRNA:   3'- -CCGCGUUC-AGGCG-UGUUG-GCGUCG--UG- -5'
21299 5' -56.5 NC_004778.3 + 48861 0.81 0.158174
Target:  5'- uGCGCAguuGGUCgCGCACGGCCuugGCGGCACg -3'
miRNA:   3'- cCGCGU---UCAG-GCGUGUUGG---CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34626 0.76 0.293563
Target:  5'- aGGCGCAAGaCCGCAUccACCGCAugggccaaaagaaGCGCa -3'
miRNA:   3'- -CCGCGUUCaGGCGUGu-UGGCGU-------------CGUG- -5'
21299 5' -56.5 NC_004778.3 + 120966 0.75 0.338179
Target:  5'- gGGCGCGGG-CCGCGCccgcuGCCcCGGCGCc -3'
miRNA:   3'- -CCGCGUUCaGGCGUGu----UGGcGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 49310 0.75 0.345947
Target:  5'- cGGCGCGgucauuggacgcGGcgCCGCACAACgugUGCGGCACc -3'
miRNA:   3'- -CCGCGU------------UCa-GGCGUGUUG---GCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 88676 0.75 0.361056
Target:  5'- uGGCGCAauuggacGGgaugucgCCGCGCAGCaaGCGGCGCg -3'
miRNA:   3'- -CCGCGU-------UCa------GGCGUGUUGg-CGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 34026 0.75 0.370012
Target:  5'- aGCGCAaaaagacggaAGUCaCGCucgACAuACCGCAGCACa -3'
miRNA:   3'- cCGCGU----------UCAG-GCG---UGU-UGGCGUCGUG- -5'
21299 5' -56.5 NC_004778.3 + 33447 0.75 0.370012
Target:  5'- cGGCGCGAaaagcgcggccGUCCGCACGGCgGC-GUGCu -3'
miRNA:   3'- -CCGCGUU-----------CAGGCGUGUUGgCGuCGUG- -5'
21299 5' -56.5 NC_004778.3 + 71052 0.75 0.378283
Target:  5'- -uCGCGAGgCCGCGucCAGCCGCuGCACa -3'
miRNA:   3'- ccGCGUUCaGGCGU--GUUGGCGuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.