miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21303 5' -55.8 NC_004778.3 + 15709 0.66 0.859416
Target:  5'- cGCUGCUgcgcgagaUGCGCCAAuugauaaaaGUGUUGgCCGc -3'
miRNA:   3'- aCGGCGA--------ACGCGGUUua-------CACGAC-GGU- -5'
21303 5' -55.8 NC_004778.3 + 10438 0.66 0.859416
Target:  5'- aGUCGCgaGCGCCuuugcAAUGcGCcGCCGg -3'
miRNA:   3'- aCGGCGaaCGCGGu----UUACaCGaCGGU- -5'
21303 5' -55.8 NC_004778.3 + 15574 0.66 0.859416
Target:  5'- aGCaguGCUUugauaucggcgGCGCCAAcgGUGCU-CCAg -3'
miRNA:   3'- aCGg--CGAA-----------CGCGGUUuaCACGAcGGU- -5'
21303 5' -55.8 NC_004778.3 + 121683 0.66 0.851371
Target:  5'- cGCUGCgcgUGCGCUucacGUGCagGCCc -3'
miRNA:   3'- aCGGCGa--ACGCGGuuuaCACGa-CGGu -5'
21303 5' -55.8 NC_004778.3 + 29341 0.66 0.851371
Target:  5'- cGCgCGCUggggUGCGCCAAGcG-GCUGUa- -3'
miRNA:   3'- aCG-GCGA----ACGCGGUUUaCaCGACGgu -5'
21303 5' -55.8 NC_004778.3 + 45000 0.66 0.851371
Target:  5'- aGUCGCUgguuuuggaccuUGCGCCGGAcgccaggauUGUGgUGgCCAa -3'
miRNA:   3'- aCGGCGA------------ACGCGGUUU---------ACACgAC-GGU- -5'
21303 5' -55.8 NC_004778.3 + 95288 0.66 0.851371
Target:  5'- cGCgUGCUUGCaGCCGuucAAUGUGCacaUGCUc -3'
miRNA:   3'- aCG-GCGAACG-CGGU---UUACACG---ACGGu -5'
21303 5' -55.8 NC_004778.3 + 40086 0.66 0.843112
Target:  5'- cGUCGCagUGCGUCAAAUcGUGCaccgGCgCAa -3'
miRNA:   3'- aCGGCGa-ACGCGGUUUA-CACGa---CG-GU- -5'
21303 5' -55.8 NC_004778.3 + 112356 0.66 0.825988
Target:  5'- gGCCGCUaugcgcgaggGCGCCGAGaacgaaGUGCagucgGCCGa -3'
miRNA:   3'- aCGGCGAa---------CGCGGUUUa-----CACGa----CGGU- -5'
21303 5' -55.8 NC_004778.3 + 95005 0.67 0.80811
Target:  5'- cGCgCGCgccgUGCGCCGAcgggcagGUGC-GCCu -3'
miRNA:   3'- aCG-GCGa---ACGCGGUUua-----CACGaCGGu -5'
21303 5' -55.8 NC_004778.3 + 8739 0.67 0.79891
Target:  5'- cGCCGCcgGCGCCG--UG-GCgcGCCAc -3'
miRNA:   3'- aCGGCGaaCGCGGUuuACaCGa-CGGU- -5'
21303 5' -55.8 NC_004778.3 + 43381 0.67 0.796118
Target:  5'- uUGCCGCagcacgcguacguuUUGCGgCAGGcGUGCgaGCCGg -3'
miRNA:   3'- -ACGGCG--------------AACGCgGUUUaCACGa-CGGU- -5'
21303 5' -55.8 NC_004778.3 + 115105 0.67 0.795185
Target:  5'- aUGCCGCgcgcguuaucgagUGCGUCAAGaGUGUggaaaccGCCAg -3'
miRNA:   3'- -ACGGCGa------------ACGCGGUUUaCACGa------CGGU- -5'
21303 5' -55.8 NC_004778.3 + 33223 0.67 0.792374
Target:  5'- gGCCGCUgcaccguUGCGCCAGGcUcucuucgaacaaaaaGUGC-GCCAg -3'
miRNA:   3'- aCGGCGA-------ACGCGGUUU-A---------------CACGaCGGU- -5'
21303 5' -55.8 NC_004778.3 + 127497 0.67 0.789549
Target:  5'- cUGCCGUUgacaacuuuggGCGCaaUAAcgGUGCUGUCGu -3'
miRNA:   3'- -ACGGCGAa----------CGCG--GUUuaCACGACGGU- -5'
21303 5' -55.8 NC_004778.3 + 63972 0.67 0.787659
Target:  5'- cGCCGacaaaccuaCGCCGGAUGUGUuggGCCAu -3'
miRNA:   3'- aCGGCgaac-----GCGGUUUACACGa--CGGU- -5'
21303 5' -55.8 NC_004778.3 + 83192 0.67 0.780994
Target:  5'- cUGCCGUcugUGCGCCGuucauguUGUGCaacauuucagcggcgGCCAg -3'
miRNA:   3'- -ACGGCGa--ACGCGGUuu-----ACACGa--------------CGGU- -5'
21303 5' -55.8 NC_004778.3 + 118953 0.67 0.780037
Target:  5'- cGCCGC-UGgGCCucguaauUGUGCgcGCCGg -3'
miRNA:   3'- aCGGCGaACgCGGuuu----ACACGa-CGGU- -5'
21303 5' -55.8 NC_004778.3 + 45824 0.68 0.750688
Target:  5'- aUGCCGCgccGCGCCAAGca-GCUGUUu -3'
miRNA:   3'- -ACGGCGaa-CGCGGUUUacaCGACGGu -5'
21303 5' -55.8 NC_004778.3 + 115406 0.68 0.710042
Target:  5'- cGCuCGCUUuuuaaaGC-CCAAAgaGUGCUGCCAg -3'
miRNA:   3'- aCG-GCGAA------CGcGGUUUa-CACGACGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.