Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21303 | 5' | -55.8 | NC_004778.3 | + | 15709 | 0.66 | 0.859416 |
Target: 5'- cGCUGCUgcgcgagaUGCGCCAAuugauaaaaGUGUUGgCCGc -3' miRNA: 3'- aCGGCGA--------ACGCGGUUua-------CACGAC-GGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 10438 | 0.66 | 0.859416 |
Target: 5'- aGUCGCgaGCGCCuuugcAAUGcGCcGCCGg -3' miRNA: 3'- aCGGCGaaCGCGGu----UUACaCGaCGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 15574 | 0.66 | 0.859416 |
Target: 5'- aGCaguGCUUugauaucggcgGCGCCAAcgGUGCU-CCAg -3' miRNA: 3'- aCGg--CGAA-----------CGCGGUUuaCACGAcGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 95288 | 0.66 | 0.851371 |
Target: 5'- cGCgUGCUUGCaGCCGuucAAUGUGCacaUGCUc -3' miRNA: 3'- aCG-GCGAACG-CGGU---UUACACG---ACGGu -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 121683 | 0.66 | 0.851371 |
Target: 5'- cGCUGCgcgUGCGCUucacGUGCagGCCc -3' miRNA: 3'- aCGGCGa--ACGCGGuuuaCACGa-CGGu -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 29341 | 0.66 | 0.851371 |
Target: 5'- cGCgCGCUggggUGCGCCAAGcG-GCUGUa- -3' miRNA: 3'- aCG-GCGA----ACGCGGUUUaCaCGACGgu -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 45000 | 0.66 | 0.851371 |
Target: 5'- aGUCGCUgguuuuggaccuUGCGCCGGAcgccaggauUGUGgUGgCCAa -3' miRNA: 3'- aCGGCGA------------ACGCGGUUU---------ACACgAC-GGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 40086 | 0.66 | 0.843112 |
Target: 5'- cGUCGCagUGCGUCAAAUcGUGCaccgGCgCAa -3' miRNA: 3'- aCGGCGa-ACGCGGUUUA-CACGa---CG-GU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 112356 | 0.66 | 0.825988 |
Target: 5'- gGCCGCUaugcgcgaggGCGCCGAGaacgaaGUGCagucgGCCGa -3' miRNA: 3'- aCGGCGAa---------CGCGGUUUa-----CACGa----CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 95005 | 0.67 | 0.80811 |
Target: 5'- cGCgCGCgccgUGCGCCGAcgggcagGUGC-GCCu -3' miRNA: 3'- aCG-GCGa---ACGCGGUUua-----CACGaCGGu -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 8739 | 0.67 | 0.79891 |
Target: 5'- cGCCGCcgGCGCCG--UG-GCgcGCCAc -3' miRNA: 3'- aCGGCGaaCGCGGUuuACaCGa-CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 43381 | 0.67 | 0.796118 |
Target: 5'- uUGCCGCagcacgcguacguuUUGCGgCAGGcGUGCgaGCCGg -3' miRNA: 3'- -ACGGCG--------------AACGCgGUUUaCACGa-CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 115105 | 0.67 | 0.795185 |
Target: 5'- aUGCCGCgcgcguuaucgagUGCGUCAAGaGUGUggaaaccGCCAg -3' miRNA: 3'- -ACGGCGa------------ACGCGGUUUaCACGa------CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 33223 | 0.67 | 0.792374 |
Target: 5'- gGCCGCUgcaccguUGCGCCAGGcUcucuucgaacaaaaaGUGC-GCCAg -3' miRNA: 3'- aCGGCGA-------ACGCGGUUU-A---------------CACGaCGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 127497 | 0.67 | 0.789549 |
Target: 5'- cUGCCGUUgacaacuuuggGCGCaaUAAcgGUGCUGUCGu -3' miRNA: 3'- -ACGGCGAa----------CGCG--GUUuaCACGACGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 63972 | 0.67 | 0.787659 |
Target: 5'- cGCCGacaaaccuaCGCCGGAUGUGUuggGCCAu -3' miRNA: 3'- aCGGCgaac-----GCGGUUUACACGa--CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 83192 | 0.67 | 0.780994 |
Target: 5'- cUGCCGUcugUGCGCCGuucauguUGUGCaacauuucagcggcgGCCAg -3' miRNA: 3'- -ACGGCGa--ACGCGGUuu-----ACACGa--------------CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 118953 | 0.67 | 0.780037 |
Target: 5'- cGCCGC-UGgGCCucguaauUGUGCgcGCCGg -3' miRNA: 3'- aCGGCGaACgCGGuuu----ACACGa-CGGU- -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 45824 | 0.68 | 0.750688 |
Target: 5'- aUGCCGCgccGCGCCAAGca-GCUGUUu -3' miRNA: 3'- -ACGGCGaa-CGCGGUUUacaCGACGGu -5' |
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21303 | 5' | -55.8 | NC_004778.3 | + | 115406 | 0.68 | 0.710042 |
Target: 5'- cGCuCGCUUuuuaaaGC-CCAAAgaGUGCUGCCAg -3' miRNA: 3'- aCG-GCGAA------CGcGGUUUa-CACGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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