Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21304 | 5' | -61.8 | NC_004778.3 | + | 32284 | 0.66 | 0.603243 |
Target: 5'- cGGCGgC-GCCGUGUCGgGCUggUGCUUa -3' miRNA: 3'- aCCGCgGgCGGCACAGCaUGG--ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 39176 | 0.66 | 0.623022 |
Target: 5'- -cGCGCaaauuugcuugUCGcCCGUGUCGUACCUuucgcgacaGUCCa -3' miRNA: 3'- acCGCG-----------GGC-GGCACAGCAUGGA---------CGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 59998 | 0.66 | 0.623022 |
Target: 5'- cGGaGUCgGCCGcgGaCG-ACCUGCCCa -3' miRNA: 3'- aCCgCGGgCGGCa-CaGCaUGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 14727 | 0.66 | 0.632925 |
Target: 5'- aGGUGCCCGgU---UCGUACCcgcUGUCCg -3' miRNA: 3'- aCCGCGGGCgGcacAGCAUGG---ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 95516 | 0.66 | 0.642827 |
Target: 5'- -cGCGUCCGCCagcucguuGUgGUCGgGCCgcGCCCa -3' miRNA: 3'- acCGCGGGCGG--------CA-CAGCaUGGa-CGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 95409 | 0.66 | 0.642827 |
Target: 5'- cGGUGCggUCGCCGcGgCGcACCaUGCCCg -3' miRNA: 3'- aCCGCG--GGCGGCaCaGCaUGG-ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 32456 | 0.66 | 0.642827 |
Target: 5'- cGGCGCagCCGCugCGUGUCGccUUUGCaCCa -3' miRNA: 3'- aCCGCG--GGCG--GCACAGCauGGACG-GG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 4556 | 0.66 | 0.642827 |
Target: 5'- cGGCGCCCagcgcGCUGUGccgCGUuagcagacugGCCacUGUCCa -3' miRNA: 3'- aCCGCGGG-----CGGCACa--GCA----------UGG--ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 68238 | 0.66 | 0.652721 |
Target: 5'- cUGGCGCUCggGCUGU-UCGaacacaGCCUGCUCg -3' miRNA: 3'- -ACCGCGGG--CGGCAcAGCa-----UGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 111970 | 0.66 | 0.652721 |
Target: 5'- cGGCGCCCucGCCcuUGU--UACCggcgcgGCCCg -3' miRNA: 3'- aCCGCGGG--CGGc-ACAgcAUGGa-----CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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