miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21304 5' -61.8 NC_004778.3 + 35213 1.11 0.000594
Target:  5'- uUGGCGCCCGCCGUGUCGUACCUGCCCu -3'
miRNA:   3'- -ACCGCGGGCGGCACAGCAUGGACGGG- -5'
21304 5' -61.8 NC_004778.3 + 36161 0.73 0.276404
Target:  5'- aUGGCguuGCCCGCCGUG-CGgUGCCauCCCa -3'
miRNA:   3'- -ACCG---CGGGCGGCACaGC-AUGGacGGG- -5'
21304 5' -61.8 NC_004778.3 + 103392 0.72 0.295165
Target:  5'- cUGGCGCCCucGUCGUguuuggcggacacGUCGUGCC-GCCa -3'
miRNA:   3'- -ACCGCGGG--CGGCA-------------CAGCAUGGaCGGg -5'
21304 5' -61.8 NC_004778.3 + 46413 0.71 0.337821
Target:  5'- uUGGCGCgUGCCGcGUCGcacaACCUGaCCa -3'
miRNA:   3'- -ACCGCGgGCGGCaCAGCa---UGGACgGG- -5'
21304 5' -61.8 NC_004778.3 + 45121 0.7 0.383984
Target:  5'- -aGCGCCCGCUGUGgagagCG-ACCcgGCCg -3'
miRNA:   3'- acCGCGGGCGGCACa----GCaUGGa-CGGg -5'
21304 5' -61.8 NC_004778.3 + 121429 0.7 0.383984
Target:  5'- -cGCGUCgGCCGUGUCGccGCCgucgGCgCCg -3'
miRNA:   3'- acCGCGGgCGGCACAGCa-UGGa---CG-GG- -5'
21304 5' -61.8 NC_004778.3 + 56773 0.69 0.425519
Target:  5'- cGGUGCUgGUCGUGUU---UCUGCCCc -3'
miRNA:   3'- aCCGCGGgCGGCACAGcauGGACGGG- -5'
21304 5' -61.8 NC_004778.3 + 121576 0.69 0.434142
Target:  5'- cGGCGacaCgGCCGacgCGUGCCUGCUg -3'
miRNA:   3'- aCCGCg--GgCGGCacaGCAUGGACGGg -5'
21304 5' -61.8 NC_004778.3 + 39768 0.69 0.460605
Target:  5'- cGGUGCCCGCCGgacUGUCcGUGgCgGUCa -3'
miRNA:   3'- aCCGCGGGCGGC---ACAG-CAUgGaCGGg -5'
21304 5' -61.8 NC_004778.3 + 6974 0.69 0.460605
Target:  5'- gGGCGCCCGUCGUGgUGUuuCC-GCgCg -3'
miRNA:   3'- aCCGCGGGCGGCACaGCAu-GGaCGgG- -5'
21304 5' -61.8 NC_004778.3 + 90692 0.69 0.469615
Target:  5'- cGGCguGCCCagccagcgGCCGguacgaaUCGUACCUGgCCCa -3'
miRNA:   3'- aCCG--CGGG--------CGGCac-----AGCAUGGAC-GGG- -5'
21304 5' -61.8 NC_004778.3 + 85274 0.68 0.486976
Target:  5'- cGGCGCCCG-CGUccaugccGUCGccGCCgcaaacGCCCg -3'
miRNA:   3'- aCCGCGGGCgGCA-------CAGCa-UGGa-----CGGG- -5'
21304 5' -61.8 NC_004778.3 + 119006 0.68 0.487898
Target:  5'- cGuGCGCgCGCCGUGUCuGUuccGCgaGCUCu -3'
miRNA:   3'- aC-CGCGgGCGGCACAG-CA---UGgaCGGG- -5'
21304 5' -61.8 NC_004778.3 + 36865 0.68 0.491595
Target:  5'- aUGGCGCCgGCgGUGcgCGU-CUuggcgagcgcgguguUGCCCa -3'
miRNA:   3'- -ACCGCGGgCGgCACa-GCAuGG---------------ACGGG- -5'
21304 5' -61.8 NC_004778.3 + 125662 0.68 0.506509
Target:  5'- cUGGCGCUCGuuGUcGUuacguaugaCGUGCCUGUa- -3'
miRNA:   3'- -ACCGCGGGCggCA-CA---------GCAUGGACGgg -5'
21304 5' -61.8 NC_004778.3 + 14350 0.68 0.525417
Target:  5'- cUGGCGuCCCGCCagcuGUGUCauGUugCUgguGCCg -3'
miRNA:   3'- -ACCGC-GGGCGG----CACAG--CAugGA---CGGg -5'
21304 5' -61.8 NC_004778.3 + 83541 0.67 0.544586
Target:  5'- aUGGCuCgUCGCgCGUGUCGUugU-GCCCg -3'
miRNA:   3'- -ACCGcG-GGCG-GCACAGCAugGaCGGG- -5'
21304 5' -61.8 NC_004778.3 + 49395 0.67 0.554256
Target:  5'- cUGGCGaCCCGaCGUGUUGUACaugaaCCg -3'
miRNA:   3'- -ACCGC-GGGCgGCACAGCAUGgacg-GG- -5'
21304 5' -61.8 NC_004778.3 + 69637 0.67 0.554256
Target:  5'- aUGGCGCuugugucacCCGgCGUGUCGUcgcGCCgGUCa -3'
miRNA:   3'- -ACCGCG---------GGCgGCACAGCA---UGGaCGGg -5'
21304 5' -61.8 NC_004778.3 + 51766 0.66 0.603243
Target:  5'- uUGGuUGUagUGCCGguagGUCGUACC-GCCCc -3'
miRNA:   3'- -ACC-GCGg-GCGGCa---CAGCAUGGaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.