Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21304 | 5' | -61.8 | NC_004778.3 | + | 4556 | 0.66 | 0.642827 |
Target: 5'- cGGCGCCCagcgcGCUGUGccgCGUuagcagacugGCCacUGUCCa -3' miRNA: 3'- aCCGCGGG-----CGGCACa--GCA----------UGG--ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 6974 | 0.69 | 0.460605 |
Target: 5'- gGGCGCCCGUCGUGgUGUuuCC-GCgCg -3' miRNA: 3'- aCCGCGGGCGGCACaGCAu-GGaCGgG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 14350 | 0.68 | 0.525417 |
Target: 5'- cUGGCGuCCCGCCagcuGUGUCauGUugCUgguGCCg -3' miRNA: 3'- -ACCGC-GGGCGG----CACAG--CAugGA---CGGg -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 14727 | 0.66 | 0.632925 |
Target: 5'- aGGUGCCCGgU---UCGUACCcgcUGUCCg -3' miRNA: 3'- aCCGCGGGCgGcacAGCAUGG---ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 32284 | 0.66 | 0.603243 |
Target: 5'- cGGCGgC-GCCGUGUCGgGCUggUGCUUa -3' miRNA: 3'- aCCGCgGgCGGCACAGCaUGG--ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 32456 | 0.66 | 0.642827 |
Target: 5'- cGGCGCagCCGCugCGUGUCGccUUUGCaCCa -3' miRNA: 3'- aCCGCG--GGCG--GCACAGCauGGACG-GG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 35213 | 1.11 | 0.000594 |
Target: 5'- uUGGCGCCCGCCGUGUCGUACCUGCCCu -3' miRNA: 3'- -ACCGCGGGCGGCACAGCAUGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 36161 | 0.73 | 0.276404 |
Target: 5'- aUGGCguuGCCCGCCGUG-CGgUGCCauCCCa -3' miRNA: 3'- -ACCG---CGGGCGGCACaGC-AUGGacGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 36865 | 0.68 | 0.491595 |
Target: 5'- aUGGCGCCgGCgGUGcgCGU-CUuggcgagcgcgguguUGCCCa -3' miRNA: 3'- -ACCGCGGgCGgCACa-GCAuGG---------------ACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 39176 | 0.66 | 0.623022 |
Target: 5'- -cGCGCaaauuugcuugUCGcCCGUGUCGUACCUuucgcgacaGUCCa -3' miRNA: 3'- acCGCG-----------GGC-GGCACAGCAUGGA---------CGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 39768 | 0.69 | 0.460605 |
Target: 5'- cGGUGCCCGCCGgacUGUCcGUGgCgGUCa -3' miRNA: 3'- aCCGCGGGCGGC---ACAG-CAUgGaCGGg -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 45121 | 0.7 | 0.383984 |
Target: 5'- -aGCGCCCGCUGUGgagagCG-ACCcgGCCg -3' miRNA: 3'- acCGCGGGCGGCACa----GCaUGGa-CGGg -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 46413 | 0.71 | 0.337821 |
Target: 5'- uUGGCGCgUGCCGcGUCGcacaACCUGaCCa -3' miRNA: 3'- -ACCGCGgGCGGCaCAGCa---UGGACgGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 49395 | 0.67 | 0.554256 |
Target: 5'- cUGGCGaCCCGaCGUGUUGUACaugaaCCg -3' miRNA: 3'- -ACCGC-GGGCgGCACAGCAUGgacg-GG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 51766 | 0.66 | 0.603243 |
Target: 5'- uUGGuUGUagUGCCGguagGUCGUACC-GCCCc -3' miRNA: 3'- -ACC-GCGg-GCGGCa---CAGCAUGGaCGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 56773 | 0.69 | 0.425519 |
Target: 5'- cGGUGCUgGUCGUGUU---UCUGCCCc -3' miRNA: 3'- aCCGCGGgCGGCACAGcauGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 59998 | 0.66 | 0.623022 |
Target: 5'- cGGaGUCgGCCGcgGaCG-ACCUGCCCa -3' miRNA: 3'- aCCgCGGgCGGCa-CaGCaUGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 68238 | 0.66 | 0.652721 |
Target: 5'- cUGGCGCUCggGCUGU-UCGaacacaGCCUGCUCg -3' miRNA: 3'- -ACCGCGGG--CGGCAcAGCa-----UGGACGGG- -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 69637 | 0.67 | 0.554256 |
Target: 5'- aUGGCGCuugugucacCCGgCGUGUCGUcgcGCCgGUCa -3' miRNA: 3'- -ACCGCG---------GGCgGCACAGCA---UGGaCGGg -5' |
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21304 | 5' | -61.8 | NC_004778.3 | + | 83541 | 0.67 | 0.544586 |
Target: 5'- aUGGCuCgUCGCgCGUGUCGUugU-GCCCg -3' miRNA: 3'- -ACCGcG-GGCG-GCACAGCAugGaCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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