miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21304 5' -61.8 NC_004778.3 + 85274 0.68 0.486976
Target:  5'- cGGCGCCCG-CGUccaugccGUCGccGCCgcaaacGCCCg -3'
miRNA:   3'- aCCGCGGGCgGCA-------CAGCa-UGGa-----CGGG- -5'
21304 5' -61.8 NC_004778.3 + 90692 0.69 0.469615
Target:  5'- cGGCguGCCCagccagcgGCCGguacgaaUCGUACCUGgCCCa -3'
miRNA:   3'- aCCG--CGGG--------CGGCac-----AGCAUGGAC-GGG- -5'
21304 5' -61.8 NC_004778.3 + 95409 0.66 0.642827
Target:  5'- cGGUGCggUCGCCGcGgCGcACCaUGCCCg -3'
miRNA:   3'- aCCGCG--GGCGGCaCaGCaUGG-ACGGG- -5'
21304 5' -61.8 NC_004778.3 + 95516 0.66 0.642827
Target:  5'- -cGCGUCCGCCagcucguuGUgGUCGgGCCgcGCCCa -3'
miRNA:   3'- acCGCGGGCGG--------CA-CAGCaUGGa-CGGG- -5'
21304 5' -61.8 NC_004778.3 + 103392 0.72 0.295165
Target:  5'- cUGGCGCCCucGUCGUguuuggcggacacGUCGUGCC-GCCa -3'
miRNA:   3'- -ACCGCGGG--CGGCA-------------CAGCAUGGaCGGg -5'
21304 5' -61.8 NC_004778.3 + 111970 0.66 0.652721
Target:  5'- cGGCGCCCucGCCcuUGU--UACCggcgcgGCCCg -3'
miRNA:   3'- aCCGCGGG--CGGc-ACAgcAUGGa-----CGGG- -5'
21304 5' -61.8 NC_004778.3 + 119006 0.68 0.487898
Target:  5'- cGuGCGCgCGCCGUGUCuGUuccGCgaGCUCu -3'
miRNA:   3'- aC-CGCGgGCGGCACAG-CA---UGgaCGGG- -5'
21304 5' -61.8 NC_004778.3 + 121429 0.7 0.383984
Target:  5'- -cGCGUCgGCCGUGUCGccGCCgucgGCgCCg -3'
miRNA:   3'- acCGCGGgCGGCACAGCa-UGGa---CG-GG- -5'
21304 5' -61.8 NC_004778.3 + 121576 0.69 0.434142
Target:  5'- cGGCGacaCgGCCGacgCGUGCCUGCUg -3'
miRNA:   3'- aCCGCg--GgCGGCacaGCAUGGACGGg -5'
21304 5' -61.8 NC_004778.3 + 125662 0.68 0.506509
Target:  5'- cUGGCGCUCGuuGUcGUuacguaugaCGUGCCUGUa- -3'
miRNA:   3'- -ACCGCGGGCggCA-CA---------GCAUGGACGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.