miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 93413 0.66 0.998503
Target:  5'- ------cGACGCCgGUGGAAaagcuaauCGCCaGCa -3'
miRNA:   3'- uuuauaaCUGCGG-CAUCUU--------GCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 28127 0.66 0.998503
Target:  5'- -cGUGUUcGCGCUGc-GAagcgcACGCCUGCa -3'
miRNA:   3'- uuUAUAAcUGCGGCauCU-----UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 48171 0.66 0.998503
Target:  5'- uGGUggUGGCGCgCGUAGAaacgaugucaAUGUCUGUu -3'
miRNA:   3'- uUUAuaACUGCG-GCAUCU----------UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 56466 0.66 0.998474
Target:  5'- cAAGUGUUgagcucgGACGaaGUGGAgguuGCGCCUGa -3'
miRNA:   3'- -UUUAUAA-------CUGCggCAUCU----UGCGGACg -5'
21313 3' -48.4 NC_004778.3 + 111343 0.66 0.998187
Target:  5'- ----uUUGGCGCUGUGGGAC-CCa-- -3'
miRNA:   3'- uuuauAACUGCGGCAUCUUGcGGacg -5'
21313 3' -48.4 NC_004778.3 + 124072 0.66 0.998187
Target:  5'- ---aGUUGAUGCCGaaucggAGGACGaggCUGUg -3'
miRNA:   3'- uuuaUAACUGCGGCa-----UCUUGCg--GACG- -5'
21313 3' -48.4 NC_004778.3 + 129292 0.66 0.998152
Target:  5'- cAAAUGcUGGCGCUGUacgccgcGGAcGCGCC-GCa -3'
miRNA:   3'- -UUUAUaACUGCGGCA-------UCU-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 60346 0.66 0.997816
Target:  5'- ---gGUUG-CGCgCGUAGAuuucgcGCGCCaGCu -3'
miRNA:   3'- uuuaUAACuGCG-GCAUCU------UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 89870 0.66 0.997816
Target:  5'- gAGAUGUUGcCGCUGUGcagcgugguGGGCGCaaGCg -3'
miRNA:   3'- -UUUAUAACuGCGGCAU---------CUUGCGgaCG- -5'
21313 3' -48.4 NC_004778.3 + 61788 0.66 0.997775
Target:  5'- ---cGUUGGCGCgCGcUGGcugcgcggcgccaAACGCUUGCa -3'
miRNA:   3'- uuuaUAACUGCG-GC-AUC-------------UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 45728 0.66 0.997383
Target:  5'- ------aGGCGCUGgaGGAGCGCUacgUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCa-UCUUGCGG---ACG- -5'
21313 3' -48.4 NC_004778.3 + 90604 0.66 0.997383
Target:  5'- ------cGGCGCCGUAGcaaGCCagGCc -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuugCGGa-CG- -5'
21313 3' -48.4 NC_004778.3 + 126003 0.66 0.997383
Target:  5'- -----aUGACGCUGcgugGGAGuCGuCCUGCc -3'
miRNA:   3'- uuuauaACUGCGGCa---UCUU-GC-GGACG- -5'
21313 3' -48.4 NC_004778.3 + 57998 0.66 0.997383
Target:  5'- ---aGUUGACGCUGcgcaacGAGCGCaUGCc -3'
miRNA:   3'- uuuaUAACUGCGGCau----CUUGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 28036 0.66 0.997383
Target:  5'- ------cGGCGgCG-AGGACGCgCUGCu -3'
miRNA:   3'- uuuauaaCUGCgGCaUCUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 62020 0.66 0.996882
Target:  5'- aAGAUGUcugcgGACGCCG-AGAgcgGCGCCa-- -3'
miRNA:   3'- -UUUAUAa----CUGCGGCaUCU---UGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 34772 0.66 0.996882
Target:  5'- ------gGAUGCgGUcuuGCGCCUGCa -3'
miRNA:   3'- uuuauaaCUGCGgCAucuUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 1851 0.66 0.996882
Target:  5'- ------cGAUGUCGggcauGCGCCUGCu -3'
miRNA:   3'- uuuauaaCUGCGGCaucu-UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 28917 0.67 0.996304
Target:  5'- ---aAUUGGCGCCGaAGcucucGGCGCUguuUGCg -3'
miRNA:   3'- uuuaUAACUGCGGCaUC-----UUGCGG---ACG- -5'
21313 3' -48.4 NC_004778.3 + 70211 0.67 0.996304
Target:  5'- ---gGUUGGCGCCGguGGGCGCagGCc -3'
miRNA:   3'- uuuaUAACUGCGGCauCUUGCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.