Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21313 | 3' | -48.4 | NC_004778.3 | + | 66692 | 0.69 | 0.985405 |
Target: 5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3' miRNA: 3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 63852 | 0.69 | 0.98613 |
Target: 5'- ---gAUUGcuuCGCCGgaacuGGACGCgCUGCa -3' miRNA: 3'- uuuaUAACu--GCGGCau---CUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 78056 | 0.69 | 0.98613 |
Target: 5'- cGGAUGUgcACGCUGUGGAguagACGCCcGUg -3' miRNA: 3'- -UUUAUAacUGCGGCAUCU----UGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 49599 | 0.68 | 0.98782 |
Target: 5'- ------cGACagguaGCCGUGcGAGCGCaCUGCg -3' miRNA: 3'- uuuauaaCUG-----CGGCAU-CUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 21861 | 0.68 | 0.98782 |
Target: 5'- gAGGUAUaGACGCCGcgcauacggccAGAcaGCGUCUGCu -3' miRNA: 3'- -UUUAUAaCUGCGGCa----------UCU--UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 89128 | 0.67 | 0.993047 |
Target: 5'- ------aGACGCgCGUuu--CGCCUGCg -3' miRNA: 3'- uuuauaaCUGCG-GCAucuuGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 99193 | 0.67 | 0.993047 |
Target: 5'- ---aAUUGugGgCGU-GAGCGCC-GCg -3' miRNA: 3'- uuuaUAACugCgGCAuCUUGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 43137 | 0.67 | 0.994882 |
Target: 5'- ------cGGCGCCGcGGcGCGCC-GCa -3' miRNA: 3'- uuuauaaCUGCGGCaUCuUGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 18331 | 0.67 | 0.99564 |
Target: 5'- -cAUGUUGugGCUGUucacccuuuuAGGGCGCUUuGUg -3' miRNA: 3'- uuUAUAACugCGGCA----------UCUUGCGGA-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 70355 | 0.67 | 0.995916 |
Target: 5'- ------gGGCGCCGUAGAuaauuuucugcucgcGCGCaaacuUGCg -3' miRNA: 3'- uuuauaaCUGCGGCAUCU---------------UGCGg----ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 32299 | 0.67 | 0.996304 |
Target: 5'- ------aGugGCCGcggcgcauUGGAGCGCCgucgUGCa -3' miRNA: 3'- uuuauaaCugCGGC--------AUCUUGCGG----ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28917 | 0.67 | 0.996304 |
Target: 5'- ---aAUUGGCGCCGaAGcucucGGCGCUguuUGCg -3' miRNA: 3'- uuuaUAACUGCGGCaUC-----UUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 70211 | 0.67 | 0.996304 |
Target: 5'- ---gGUUGGCGCCGguGGGCGCagGCc -3' miRNA: 3'- uuuaUAACUGCGGCauCUUGCGgaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 1851 | 0.66 | 0.996882 |
Target: 5'- ------cGAUGUCGggcauGCGCCUGCu -3' miRNA: 3'- uuuauaaCUGCGGCaucu-UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 62020 | 0.66 | 0.996882 |
Target: 5'- aAGAUGUcugcgGACGCCG-AGAgcgGCGCCa-- -3' miRNA: 3'- -UUUAUAa----CUGCGGCaUCU---UGCGGacg -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 34772 | 0.66 | 0.996882 |
Target: 5'- ------gGAUGCgGUcuuGCGCCUGCa -3' miRNA: 3'- uuuauaaCUGCGgCAucuUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 90604 | 0.66 | 0.997383 |
Target: 5'- ------cGGCGCCGUAGcaaGCCagGCc -3' miRNA: 3'- uuuauaaCUGCGGCAUCuugCGGa-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 45728 | 0.66 | 0.997383 |
Target: 5'- ------aGGCGCUGgaGGAGCGCUacgUGCg -3' miRNA: 3'- uuuauaaCUGCGGCa-UCUUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28036 | 0.66 | 0.997383 |
Target: 5'- ------cGGCGgCG-AGGACGCgCUGCu -3' miRNA: 3'- uuuauaaCUGCgGCaUCUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 126003 | 0.66 | 0.997383 |
Target: 5'- -----aUGACGCUGcgugGGAGuCGuCCUGCc -3' miRNA: 3'- uuuauaACUGCGGCa---UCUU-GC-GGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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