miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 129292 0.66 0.998152
Target:  5'- cAAAUGcUGGCGCUGUacgccgcGGAcGCGCC-GCa -3'
miRNA:   3'- -UUUAUaACUGCGGCA-------UCU-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 129145 0.77 0.69311
Target:  5'- -----cUGACGCCGUGGAAUuGCCgGCc -3'
miRNA:   3'- uuuauaACUGCGGCAUCUUG-CGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 126003 0.66 0.997383
Target:  5'- -----aUGACGCUGcgugGGAGuCGuCCUGCc -3'
miRNA:   3'- uuuauaACUGCGGCa---UCUU-GC-GGACG- -5'
21313 3' -48.4 NC_004778.3 + 124462 0.7 0.965512
Target:  5'- ------aGACGCCGUGcccACGCCgGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUcu-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 124072 0.66 0.998187
Target:  5'- ---aGUUGAUGCCGaaucggAGGACGaggCUGUg -3'
miRNA:   3'- uuuaUAACUGCGGCa-----UCUUGCg--GACG- -5'
21313 3' -48.4 NC_004778.3 + 121767 0.72 0.923623
Target:  5'- ------cGACGgCGUGGAccGCGCgCUGCa -3'
miRNA:   3'- uuuauaaCUGCgGCAUCU--UGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 121302 0.7 0.968865
Target:  5'- ---aGUUGAaccCGCUGcAGAugGCUUGCa -3'
miRNA:   3'- uuuaUAACU---GCGGCaUCUugCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 111343 0.66 0.998187
Target:  5'- ----uUUGGCGCUGUGGGAC-CCa-- -3'
miRNA:   3'- uuuauAACUGCGGCAUCUUGcGGacg -5'
21313 3' -48.4 NC_004778.3 + 110337 0.69 0.984265
Target:  5'- -----gUGGCGCCGUcugcGAaaGCGCgUGCg -3'
miRNA:   3'- uuuauaACUGCGGCAu---CU--UGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 105142 0.69 0.979972
Target:  5'- aGAAUug-GGCGCCGcGGcGCGCUUGUu -3'
miRNA:   3'- -UUUAuaaCUGCGGCaUCuUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 99193 0.67 0.993047
Target:  5'- ---aAUUGugGgCGU-GAGCGCC-GCg -3'
miRNA:   3'- uuuaUAACugCgGCAuCUUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 96526 0.71 0.940017
Target:  5'- ------gGGCGCaaaaugGGAGCGCCUGCc -3'
miRNA:   3'- uuuauaaCUGCGgca---UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 93413 0.66 0.998503
Target:  5'- ------cGACGCCgGUGGAAaagcuaauCGCCaGCa -3'
miRNA:   3'- uuuauaaCUGCGG-CAUCUU--------GCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 90604 0.66 0.997383
Target:  5'- ------cGGCGCCGUAGcaaGCCagGCc -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuugCGGa-CG- -5'
21313 3' -48.4 NC_004778.3 + 89870 0.66 0.997816
Target:  5'- gAGAUGUUGcCGCUGUGcagcgugguGGGCGCaaGCg -3'
miRNA:   3'- -UUUAUAACuGCGGCAU---------CUUGCGgaCG- -5'
21313 3' -48.4 NC_004778.3 + 89128 0.67 0.993047
Target:  5'- ------aGACGCgCGUuu--CGCCUGCg -3'
miRNA:   3'- uuuauaaCUGCG-GCAucuuGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 86477 0.69 0.979972
Target:  5'- ---aGUUG-UGUCGUAcuggagcgcguuGAACGCCUGCu -3'
miRNA:   3'- uuuaUAACuGCGGCAU------------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 81718 0.69 0.977525
Target:  5'- -----aUGAcCGCUuaGUAGcGGCGCCUGCg -3'
miRNA:   3'- uuuauaACU-GCGG--CAUC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 78056 0.69 0.98613
Target:  5'- cGGAUGUgcACGCUGUGGAguagACGCCcGUg -3'
miRNA:   3'- -UUUAUAacUGCGGCAUCU----UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 70355 0.67 0.995916
Target:  5'- ------gGGCGCCGUAGAuaauuuucugcucgcGCGCaaacuUGCg -3'
miRNA:   3'- uuuauaaCUGCGGCAUCU---------------UGCGg----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.