miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21313 3' -48.4 NC_004778.3 + 129292 0.66 0.998152
Target:  5'- cAAAUGcUGGCGCUGUacgccgcGGAcGCGCC-GCa -3'
miRNA:   3'- -UUUAUaACUGCGGCA-------UCU-UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 89128 0.67 0.993047
Target:  5'- ------aGACGCgCGUuu--CGCCUGCg -3'
miRNA:   3'- uuuauaaCUGCG-GCAucuuGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 43137 0.67 0.994882
Target:  5'- ------cGGCGCCGcGGcGCGCC-GCa -3'
miRNA:   3'- uuuauaaCUGCGGCaUCuUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 62020 0.66 0.996882
Target:  5'- aAGAUGUcugcgGACGCCG-AGAgcgGCGCCa-- -3'
miRNA:   3'- -UUUAUAa----CUGCGGCaUCU---UGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 28036 0.66 0.997383
Target:  5'- ------cGGCGgCG-AGGACGCgCUGCu -3'
miRNA:   3'- uuuauaaCUGCgGCaUCUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 57998 0.66 0.997383
Target:  5'- ---aGUUGACGCUGcgcaacGAGCGCaUGCc -3'
miRNA:   3'- uuuaUAACUGCGGCau----CUUGCGgACG- -5'
21313 3' -48.4 NC_004778.3 + 126003 0.66 0.997383
Target:  5'- -----aUGACGCUGcgugGGAGuCGuCCUGCc -3'
miRNA:   3'- uuuauaACUGCGGCa---UCUU-GC-GGACG- -5'
21313 3' -48.4 NC_004778.3 + 89870 0.66 0.997816
Target:  5'- gAGAUGUUGcCGCUGUGcagcgugguGGGCGCaaGCg -3'
miRNA:   3'- -UUUAUAACuGCGGCAU---------CUUGCGgaCG- -5'
21313 3' -48.4 NC_004778.3 + 60346 0.66 0.997816
Target:  5'- ---gGUUG-CGCgCGUAGAuuucgcGCGCCaGCu -3'
miRNA:   3'- uuuaUAACuGCG-GCAUCU------UGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 49599 0.68 0.98782
Target:  5'- ------cGACagguaGCCGUGcGAGCGCaCUGCg -3'
miRNA:   3'- uuuauaaCUG-----CGGCAU-CUUGCG-GACG- -5'
21313 3' -48.4 NC_004778.3 + 66758 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucacuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 66692 0.69 0.985405
Target:  5'- ------cGGCGCCGaccucgcuuuucgAGAACGUCUGUa -3'
miRNA:   3'- uuuauaaCUGCGGCa------------UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 8745 0.72 0.917605
Target:  5'- ------cGGCGCCGUGGcGCGCCa-- -3'
miRNA:   3'- uuuauaaCUGCGGCAUCuUGCGGacg -5'
21313 3' -48.4 NC_004778.3 + 4041 0.72 0.922442
Target:  5'- uGAAUGUguuCGCCGgcgggcaggccGAGCGCCUGCc -3'
miRNA:   3'- -UUUAUAacuGCGGCau---------CUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 20208 0.71 0.940017
Target:  5'- uAGUcgUGGCGaCUGUGGccuccuuguGCGCCUGCc -3'
miRNA:   3'- uUUAuaACUGC-GGCAUCu--------UGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 96526 0.71 0.940017
Target:  5'- ------gGGCGCaaaaugGGAGCGCCUGCc -3'
miRNA:   3'- uuuauaaCUGCGgca---UCUUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 121302 0.7 0.968865
Target:  5'- ---aGUUGAaccCGCUGcAGAugGCUUGCa -3'
miRNA:   3'- uuuaUAACU---GCGGCaUCUugCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 8623 0.7 0.971679
Target:  5'- ----uUUGACGCCGUGGugguggaAGCGUCcGCc -3'
miRNA:   3'- uuuauAACUGCGGCAUC-------UUGCGGaCG- -5'
21313 3' -48.4 NC_004778.3 + 81718 0.69 0.977525
Target:  5'- -----aUGAcCGCUuaGUAGcGGCGCCUGCg -3'
miRNA:   3'- uuuauaACU-GCGG--CAUC-UUGCGGACG- -5'
21313 3' -48.4 NC_004778.3 + 105142 0.69 0.979972
Target:  5'- aGAAUug-GGCGCCGcGGcGCGCUUGUu -3'
miRNA:   3'- -UUUAuaaCUGCGGCaUCuUGCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.