Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21313 | 3' | -48.4 | NC_004778.3 | + | 28127 | 0.66 | 0.998503 |
Target: 5'- -cGUGUUcGCGCUGc-GAagcgcACGCCUGCa -3' miRNA: 3'- uuUAUAAcUGCGGCauCU-----UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 78056 | 0.69 | 0.98613 |
Target: 5'- cGGAUGUgcACGCUGUGGAguagACGCCcGUg -3' miRNA: 3'- -UUUAUAacUGCGGCAUCU----UGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 47668 | 0.69 | 0.979972 |
Target: 5'- cGGUGUUGGCGCCG-GGAaaaAUGCCcaGCc -3' miRNA: 3'- uUUAUAACUGCGGCaUCU---UGCGGa-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 129145 | 0.77 | 0.69311 |
Target: 5'- -----cUGACGCCGUGGAAUuGCCgGCc -3' miRNA: 3'- uuuauaACUGCGGCAUCUUG-CGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 61788 | 0.66 | 0.997775 |
Target: 5'- ---cGUUGGCGCgCGcUGGcugcgcggcgccaAACGCUUGCa -3' miRNA: 3'- uuuaUAACUGCG-GC-AUC-------------UUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 45728 | 0.66 | 0.997383 |
Target: 5'- ------aGGCGCUGgaGGAGCGCUacgUGCg -3' miRNA: 3'- uuuauaaCUGCGGCa-UCUUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 34772 | 0.66 | 0.996882 |
Target: 5'- ------gGAUGCgGUcuuGCGCCUGCa -3' miRNA: 3'- uuuauaaCUGCGgCAucuUGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 1851 | 0.66 | 0.996882 |
Target: 5'- ------cGAUGUCGggcauGCGCCUGCu -3' miRNA: 3'- uuuauaaCUGCGGCaucu-UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 32299 | 0.67 | 0.996304 |
Target: 5'- ------aGugGCCGcggcgcauUGGAGCGCCgucgUGCa -3' miRNA: 3'- uuuauaaCugCGGC--------AUCUUGCGG----ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 63852 | 0.69 | 0.98613 |
Target: 5'- ---gAUUGcuuCGCCGgaacuGGACGCgCUGCa -3' miRNA: 3'- uuuaUAACu--GCGGCau---CUUGCG-GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 18331 | 0.67 | 0.99564 |
Target: 5'- -cAUGUUGugGCUGUucacccuuuuAGGGCGCUUuGUg -3' miRNA: 3'- uuUAUAACugCGGCA----------UCUUGCGGA-CG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 28917 | 0.67 | 0.996304 |
Target: 5'- ---aAUUGGCGCCGaAGcucucGGCGCUguuUGCg -3' miRNA: 3'- uuuaUAACUGCGGCaUC-----UUGCGG---ACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 48171 | 0.66 | 0.998503 |
Target: 5'- uGGUggUGGCGCgCGUAGAaacgaugucaAUGUCUGUu -3' miRNA: 3'- uUUAuaACUGCG-GCAUCU----------UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 99193 | 0.67 | 0.993047 |
Target: 5'- ---aAUUGugGgCGU-GAGCGCC-GCg -3' miRNA: 3'- uuuaUAACugCgGCAuCUUGCGGaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 111343 | 0.66 | 0.998187 |
Target: 5'- ----uUUGGCGCUGUGGGAC-CCa-- -3' miRNA: 3'- uuuauAACUGCGGCAUCUUGcGGacg -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 70211 | 0.67 | 0.996304 |
Target: 5'- ---gGUUGGCGCCGguGGGCGCagGCc -3' miRNA: 3'- uuuaUAACUGCGGCauCUUGCGgaCG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 21861 | 0.68 | 0.98782 |
Target: 5'- gAGGUAUaGACGCCGcgcauacggccAGAcaGCGUCUGCu -3' miRNA: 3'- -UUUAUAaCUGCGGCa----------UCU--UGCGGACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 110337 | 0.69 | 0.984265 |
Target: 5'- -----gUGGCGCCGUcugcGAaaGCGCgUGCg -3' miRNA: 3'- uuuauaACUGCGGCAu---CU--UGCGgACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 124072 | 0.66 | 0.998187 |
Target: 5'- ---aGUUGAUGCCGaaucggAGGACGaggCUGUg -3' miRNA: 3'- uuuaUAACUGCGGCa-----UCUUGCg--GACG- -5' |
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21313 | 3' | -48.4 | NC_004778.3 | + | 90604 | 0.66 | 0.997383 |
Target: 5'- ------cGGCGCCGUAGcaaGCCagGCc -3' miRNA: 3'- uuuauaaCUGCGGCAUCuugCGGa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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