miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21319 3' -45.8 NC_004778.3 + 66458 1.07 0.025628
Target:  5'- cGUUCUCGAAAAGCGAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66589 1.07 0.025628
Target:  5'- cGUUCUCGAAAAGCGAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 19715 1.07 0.028074
Target:  5'- uGUUCUCGAAAAGCGAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66523 0.97 0.10459
Target:  5'- cGUUUUUGAAAAGCGAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 99436 0.96 0.124453
Target:  5'- cGUUCUCGAAAAGCGAGcGCUAUCUUa -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCaCGAUAGAAa -5'
21319 3' -45.8 NC_004778.3 + 122527 0.94 0.160861
Target:  5'- uGUUCUCGAAAAGCGAGUGCUAUa--- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAgaaa -5'
21319 3' -45.8 NC_004778.3 + 122589 0.94 0.160861
Target:  5'- uGUUCUCGAAAAGCGAGUGCUAUa--- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCACGAUAgaaa -5'
21319 3' -45.8 NC_004778.3 + 122638 0.91 0.243019
Target:  5'- uUUCUCGAAAAGCGAGUGCUAUa--- -3'
miRNA:   3'- cAAGAGCUUUUCGCUCACGAUAgaaa -5'
21319 3' -45.8 NC_004778.3 + 66718 0.88 0.323446
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 66652 0.88 0.323446
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 19998 0.88 0.323446
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 19843 0.88 0.323446
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUa -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 99978 0.83 0.536814
Target:  5'- cGUUUguaccCGAAAAGCGAGUGCUAUUUUUa -3'
miRNA:   3'- -CAAGa----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 100043 0.82 0.581289
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 99845 0.82 0.581289
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 99911 0.82 0.581289
Target:  5'- -gUCUguaccCGAAAAGCGAGUGCUAUUUUUa -3'
miRNA:   3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 100101 0.82 0.592541
Target:  5'- ----cCGAAAAGCGAGUGCUAUUUUUa -3'
miRNA:   3'- caagaGCUUUUCGCUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 122699 0.79 0.738186
Target:  5'- uGUUCUCGAAAAaCaAGUGCUAUCUUUa -3'
miRNA:   3'- -CAAGAGCUUUUcGcUCACGAUAGAAA- -5'
21319 3' -45.8 NC_004778.3 + 19971 0.78 0.790562
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5'
21319 3' -45.8 NC_004778.3 + 66780 0.78 0.790562
Target:  5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3'
miRNA:   3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.