Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21319 | 3' | -45.8 | NC_004778.3 | + | 19715 | 1.07 | 0.028074 |
Target: 5'- uGUUCUCGAAAAGCGAGUGCUAUCUUUa -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 19766 | 0.7 | 0.993433 |
Target: 5'- cUUUUCGGGcacGAGCGuuaucgaaaaacaAGUGCUAUCUUUa -3' miRNA: 3'- cAAGAGCUU---UUCGC-------------UCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 19843 | 0.88 | 0.323446 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUa -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 19971 | 0.78 | 0.790562 |
Target: 5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 19998 | 0.88 | 0.323446 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 20071 | 0.76 | 0.888535 |
Target: 5'- cGUUCUCGAAAAGCGAGgucgGCg------ -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 23994 | 0.68 | 0.99842 |
Target: 5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3' miRNA: 3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 24192 | 0.68 | 0.99842 |
Target: 5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3' miRNA: 3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 24390 | 0.68 | 0.99842 |
Target: 5'- cGUUCUCGuAAAGCGAGUaCUAa---- -3' miRNA: 3'- -CAAGAGCuUUUCGCUCAcGAUagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66458 | 1.07 | 0.025628 |
Target: 5'- cGUUCUCGAAAAGCGAGUGCUAUCUUUa -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66523 | 0.97 | 0.10459 |
Target: 5'- cGUUUUUGAAAAGCGAGUGCUAUCUUUa -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66581 | 0.69 | 0.996662 |
Target: 5'- --aCUCGAAAAGCGAGgucgGCg--CUg- -3' miRNA: 3'- caaGAGCUUUUCGCUCa---CGauaGAaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66589 | 1.07 | 0.025628 |
Target: 5'- cGUUCUCGAAAAGCGAGUGCUAUCUUUa -3' miRNA: 3'- -CAAGAGCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66652 | 0.88 | 0.323446 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66718 | 0.88 | 0.323446 |
Target: 5'- -gUCUguaccCGAAAAGCGAGUGCUAUCUUUg -3' miRNA: 3'- caAGA-----GCUUUUCGCUCACGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66780 | 0.78 | 0.790562 |
Target: 5'- cGUUCUCGAAAAGCGAGgucgGCg--CUg- -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauaGAaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66784 | 0.72 | 0.972459 |
Target: 5'- -gUCUguacgCGAAAAaCGAGUGCUAUCUUa -3' miRNA: 3'- caAGA-----GCUUUUcGCUCACGAUAGAAa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66846 | 0.76 | 0.888535 |
Target: 5'- cGUUCUCGAAAAGCGAGgucgGCg------ -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66855 | 0.77 | 0.829391 |
Target: 5'- ----cCGAAAAGCGAG-GCUAUCUUUa -3' miRNA: 3'- caagaGCUUUUCGCUCaCGAUAGAAA- -5' |
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21319 | 3' | -45.8 | NC_004778.3 | + | 66912 | 0.72 | 0.980551 |
Target: 5'- cGUUCUCGAAAAGUGAGgucgGCg------ -3' miRNA: 3'- -CAAGAGCUUUUCGCUCa---CGauagaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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