miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21333 3' -54.5 NC_004778.3 + 970 0.76 0.387415
Target:  5'- gUCGUcgGCGUCGaUcgGCGCAGCAGCgGCu -3'
miRNA:   3'- -AGCG--UGUAGC-GuaCGCGUUGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 1705 0.68 0.82448
Target:  5'- -gGCGCAUgccCGaCAUGCGUAuaaACAGuCCGCg -3'
miRNA:   3'- agCGUGUA---GC-GUACGCGU---UGUC-GGUG- -5'
21333 3' -54.5 NC_004778.3 + 1767 0.66 0.895106
Target:  5'- -aGCGCAaCGUguguuugaaggaGUGCGCGGacgGGCCGCa -3'
miRNA:   3'- agCGUGUaGCG------------UACGCGUUg--UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 1970 0.7 0.728723
Target:  5'- gUCGUugAcCGCGUGCaCAGCucguGCCGCu -3'
miRNA:   3'- -AGCGugUaGCGUACGcGUUGu---CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 2569 0.66 0.908231
Target:  5'- aCGCGCAauaaaguggUCGUcggGCGCGGgcacguCGGCCACc -3'
miRNA:   3'- aGCGUGU---------AGCGua-CGCGUU------GUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 4959 0.71 0.676858
Target:  5'- aCGCGuCAU-GCGUGCGCcgcGACAuuGCCACg -3'
miRNA:   3'- aGCGU-GUAgCGUACGCG---UUGU--CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 6195 0.67 0.869026
Target:  5'- gUCGCGgGUCGUAcucaucgagcugcuuUGCGguaAACAGCUGCu -3'
miRNA:   3'- -AGCGUgUAGCGU---------------ACGCg--UUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 6777 0.68 0.832318
Target:  5'- cCGUGCAUUGCAucaaagaagaguuUGC-CAACAGCgGCu -3'
miRNA:   3'- aGCGUGUAGCGU-------------ACGcGUUGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 6888 0.74 0.509629
Target:  5'- aCGCAaAUCGCGuuUGCGCG-CGGCCAa -3'
miRNA:   3'- aGCGUgUAGCGU--ACGCGUuGUCGGUg -5'
21333 3' -54.5 NC_004778.3 + 10039 0.67 0.858071
Target:  5'- aUUGCAaaggaagCGCGUGCGCAACAuGCa-- -3'
miRNA:   3'- -AGCGUgua----GCGUACGCGUUGU-CGgug -5'
21333 3' -54.5 NC_004778.3 + 10403 0.66 0.919766
Target:  5'- gCGCGCAaucggCGCGcUGCGCAcuaaACAccugcucGCCGCc -3'
miRNA:   3'- aGCGUGUa----GCGU-ACGCGU----UGU-------CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 10768 0.67 0.873585
Target:  5'- aCGCACAa-GC-UGuCGUAACGGCUGCa -3'
miRNA:   3'- aGCGUGUagCGuAC-GCGUUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 12205 0.68 0.794489
Target:  5'- cCGCACGUCugaacuggacaaauGCAcucGCGCAACAGaCCGu -3'
miRNA:   3'- aGCGUGUAG--------------CGUa--CGCGUUGUC-GGUg -5'
21333 3' -54.5 NC_004778.3 + 13621 0.68 0.841683
Target:  5'- -aGCGC--CGCGUGCaGCAcCAGCUGCa -3'
miRNA:   3'- agCGUGuaGCGUACG-CGUuGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 13915 0.67 0.858071
Target:  5'- -gGCAUAUCGUAUGUGauuauaAGCcugauaaaagGGCCACa -3'
miRNA:   3'- agCGUGUAGCGUACGCg-----UUG----------UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 14509 0.67 0.858071
Target:  5'- gCGCGCGUUGCA-GCGCAuuucgaACcGCCuCg -3'
miRNA:   3'- aGCGUGUAGCGUaCGCGU------UGuCGGuG- -5'
21333 3' -54.5 NC_004778.3 + 14554 0.7 0.728723
Target:  5'- cCGCGCGUC-CAUGUGCGccagcauuguggACGGCCu- -3'
miRNA:   3'- aGCGUGUAGcGUACGCGU------------UGUCGGug -5'
21333 3' -54.5 NC_004778.3 + 15857 0.7 0.738869
Target:  5'- -gGCGCAUCuc--GCGCAGCAGCgCGCc -3'
miRNA:   3'- agCGUGUAGcguaCGCGUUGUCG-GUG- -5'
21333 3' -54.5 NC_004778.3 + 16303 0.69 0.755881
Target:  5'- gCGCACGUCGCAcagcgagucgaaguUguucGCGUGGCGGCC-Ca -3'
miRNA:   3'- aGCGUGUAGCGU--------------A----CGCGUUGUCGGuG- -5'
21333 3' -54.5 NC_004778.3 + 17360 0.66 0.888173
Target:  5'- cUCGCGCAccgccgucUCGUAgauuuugGCGUccguGCAGUCGCg -3'
miRNA:   3'- -AGCGUGU--------AGCGUa------CGCGu---UGUCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.