miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21333 3' -54.5 NC_004778.3 + 38082 0.71 0.676858
Target:  5'- cCGCuGCggCGCGacGCGCAACAGCaCGCu -3'
miRNA:   3'- aGCG-UGuaGCGUa-CGCGUUGUCG-GUG- -5'
21333 3' -54.5 NC_004778.3 + 77366 0.73 0.529915
Target:  5'- gCGCGCcgCGCGcuggugcaaUGCGCAcgcgcCGGCCGCg -3'
miRNA:   3'- aGCGUGuaGCGU---------ACGCGUu----GUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 64652 0.72 0.612358
Target:  5'- aUGCACAUC-CGUGCGCuuucaacGGCgcgGGCCACa -3'
miRNA:   3'- aGCGUGUAGcGUACGCG-------UUG---UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 106467 0.72 0.613416
Target:  5'- cUGCGCG-CGCAaaacGCGCAACuauuGGCCGCg -3'
miRNA:   3'- aGCGUGUaGCGUa---CGCGUUG----UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 108512 0.72 0.624002
Target:  5'- gUCGCGCGUCGUu--CGaGACGGCCAUg -3'
miRNA:   3'- -AGCGUGUAGCGuacGCgUUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 73523 0.71 0.645187
Target:  5'- aCGCGCAauUCgGCG-GCGCAGCAGCUu- -3'
miRNA:   3'- aGCGUGU--AG-CGUaCGCGUUGUCGGug -5'
21333 3' -54.5 NC_004778.3 + 23691 0.71 0.666327
Target:  5'- aCGCGCua-GCGUGCGCAGaaacuGGCCGa -3'
miRNA:   3'- aGCGUGuagCGUACGCGUUg----UCGGUg -5'
21333 3' -54.5 NC_004778.3 + 4959 0.71 0.676858
Target:  5'- aCGCGuCAU-GCGUGCGCcgcGACAuuGCCACg -3'
miRNA:   3'- aGCGU-GUAgCGUACGCG---UUGU--CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 40529 0.71 0.676858
Target:  5'- -gGCGCGUCGCAUucauugGCGCGACuuugguaauGCUGCa -3'
miRNA:   3'- agCGUGUAGCGUA------CGCGUUGu--------CGGUG- -5'
21333 3' -54.5 NC_004778.3 + 55287 0.73 0.529915
Target:  5'- gUCGCugG-CGC--GCGCAGCGGCCGa -3'
miRNA:   3'- -AGCGugUaGCGuaCGCGUUGUCGGUg -5'
21333 3' -54.5 NC_004778.3 + 20918 0.73 0.519733
Target:  5'- gCGCACAUUGCGauaaUGcCGCAGCccagccGGCCGCc -3'
miRNA:   3'- aGCGUGUAGCGU----AC-GCGUUG------UCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 80628 0.74 0.499609
Target:  5'- -aGCGauUCGC-UGCGCAGCAGCgGCa -3'
miRNA:   3'- agCGUguAGCGuACGCGUUGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 122394 0.78 0.293107
Target:  5'- aCGUGCGUCGCGUGCGuCAGC-GCCGa -3'
miRNA:   3'- aGCGUGUAGCGUACGC-GUUGuCGGUg -5'
21333 3' -54.5 NC_004778.3 + 114618 0.77 0.322419
Target:  5'- aCGCAUuaucuuAUCGCGUGCGuCAuuuguuuuGCAGCCGCg -3'
miRNA:   3'- aGCGUG------UAGCGUACGC-GU--------UGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 970 0.76 0.387415
Target:  5'- gUCGUcgGCGUCGaUcgGCGCAGCAGCgGCu -3'
miRNA:   3'- -AGCG--UGUAGC-GuaCGCGUUGUCGgUG- -5'
21333 3' -54.5 NC_004778.3 + 34922 0.75 0.441499
Target:  5'- -aGCGCAUgGCAuugUGCGCGGCGGCguCg -3'
miRNA:   3'- agCGUGUAgCGU---ACGCGUUGUCGguG- -5'
21333 3' -54.5 NC_004778.3 + 32435 0.75 0.460457
Target:  5'- aCGCACGgcugcaucaGCAUGCGgcGCAGCCGCu -3'
miRNA:   3'- aGCGUGUag-------CGUACGCguUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 32137 0.74 0.470097
Target:  5'- cUGCACGacggCGCuccaAUGCGCcGCGGCCACu -3'
miRNA:   3'- aGCGUGUa---GCG----UACGCGuUGUCGGUG- -5'
21333 3' -54.5 NC_004778.3 + 116033 0.74 0.470097
Target:  5'- gCGCACGUCgauugguccgGCGUGCGCAuguguGCGGCCc- -3'
miRNA:   3'- aGCGUGUAG----------CGUACGCGU-----UGUCGGug -5'
21333 3' -54.5 NC_004778.3 + 38212 0.74 0.489677
Target:  5'- uUCGCGuacuCGUCGC-UGCGC-ACGGCCAg -3'
miRNA:   3'- -AGCGU----GUAGCGuACGCGuUGUCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.