Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21335 | 5' | -55.8 | NC_004778.3 | + | 47203 | 0.66 | 0.864713 |
Target: 5'- gGCGCGCUGCagaaaaucaaGCuGACGCAcgGCGu- -3' miRNA: 3'- aCGCGCGGCG----------UGcCUGUGUaaCGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 37859 | 0.66 | 0.864713 |
Target: 5'- cGaCGCGCaCGCGCaGACu--UUGCAAAg -3' miRNA: 3'- aC-GCGCG-GCGUGcCUGuguAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 65763 | 0.66 | 0.856838 |
Target: 5'- aGCGaGCCGgGCGGugACg--GCGAu -3' miRNA: 3'- aCGCgCGGCgUGCCugUGuaaCGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 11766 | 0.66 | 0.856838 |
Target: 5'- gGCGgaGuuGCGCGGACcCGUUaaaGCAAAa -3' miRNA: 3'- aCGCg-CggCGUGCCUGuGUAA---CGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 32826 | 0.66 | 0.848746 |
Target: 5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3' miRNA: 3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 110109 | 0.66 | 0.848746 |
Target: 5'- gUGCGCGCCgaGCGCuuGGGCACcg-GCc-- -3' miRNA: 3'- -ACGCGCGG--CGUG--CCUGUGuaaCGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 83110 | 0.66 | 0.848746 |
Target: 5'- uUGCGCGCCGCGaucGACugGUUa---- -3' miRNA: 3'- -ACGCGCGGCGUgc-CUGugUAAcguuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 97542 | 0.66 | 0.848746 |
Target: 5'- uUGCGCGCCGCcacacgaugGCGGucagcaaauACGCGaUGCc-- -3' miRNA: 3'- -ACGCGCGGCG---------UGCC---------UGUGUaACGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 106445 | 0.66 | 0.848746 |
Target: 5'- cUGCG-GCgGgCACGGGCGCugacgAUUGCAGu -3' miRNA: 3'- -ACGCgCGgC-GUGCCUGUG-----UAACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 117954 | 0.66 | 0.848746 |
Target: 5'- gGUGCGCCGCuugcgcuuguUGGACACua-GCGu- -3' miRNA: 3'- aCGCGCGGCGu---------GCCUGUGuaaCGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 118484 | 0.66 | 0.848746 |
Target: 5'- aUGUGCacuCUGUGCGGGCACAUguaguaugcguUGCAAu -3' miRNA: 3'- -ACGCGc--GGCGUGCCUGUGUA-----------ACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 48772 | 0.66 | 0.848746 |
Target: 5'- gGuCGCGUCGCuAUGGuCGCAcgGCAAGu -3' miRNA: 3'- aC-GCGCGGCG-UGCCuGUGUaaCGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 4607 | 0.66 | 0.848746 |
Target: 5'- cGCGUgccagGCCGCGCGauuccggacgaaGACACugUGCAAAa -3' miRNA: 3'- aCGCG-----CGGCGUGC------------CUGUGuaACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 5111 | 0.66 | 0.840446 |
Target: 5'- aUGuCGCGgCGCACGcauGACGCGUUGgAc- -3' miRNA: 3'- -AC-GCGCgGCGUGC---CUGUGUAACgUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 10836 | 0.66 | 0.840446 |
Target: 5'- --aGCGC--CugGGGCGCGUUGCGAGg -3' miRNA: 3'- acgCGCGgcGugCCUGUGUAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 18780 | 0.66 | 0.835368 |
Target: 5'- gGCGCGCgGCguuuuuugcucacggGCguGGGCACGUaacuUGCAGAg -3' miRNA: 3'- aCGCGCGgCG---------------UG--CCUGUGUA----ACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 38755 | 0.66 | 0.835368 |
Target: 5'- uUGCGacgGCCgGCGCuuugcggaacauaguGGACGCGUUGCGc- -3' miRNA: 3'- -ACGCg--CGG-CGUG---------------CCUGUGUAACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 85460 | 0.66 | 0.831944 |
Target: 5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3' miRNA: 3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 107922 | 0.66 | 0.831083 |
Target: 5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3' miRNA: 3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 41822 | 0.67 | 0.823248 |
Target: 5'- -aCGCGCaCGCuguCGGAgGCGUUGgAGAa -3' miRNA: 3'- acGCGCG-GCGu--GCCUgUGUAACgUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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