miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 47203 0.66 0.864713
Target:  5'- gGCGCGCUGCagaaaaucaaGCuGACGCAcgGCGu- -3'
miRNA:   3'- aCGCGCGGCG----------UGcCUGUGUaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 37859 0.66 0.864713
Target:  5'- cGaCGCGCaCGCGCaGACu--UUGCAAAg -3'
miRNA:   3'- aC-GCGCG-GCGUGcCUGuguAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 65763 0.66 0.856838
Target:  5'- aGCGaGCCGgGCGGugACg--GCGAu -3'
miRNA:   3'- aCGCgCGGCgUGCCugUGuaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 11766 0.66 0.856838
Target:  5'- gGCGgaGuuGCGCGGACcCGUUaaaGCAAAa -3'
miRNA:   3'- aCGCg-CggCGUGCCUGuGUAA---CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 83110 0.66 0.848746
Target:  5'- uUGCGCGCCGCGaucGACugGUUa---- -3'
miRNA:   3'- -ACGCGCGGCGUgc-CUGugUAAcguuu -5'
21335 5' -55.8 NC_004778.3 + 97542 0.66 0.848746
Target:  5'- uUGCGCGCCGCcacacgaugGCGGucagcaaauACGCGaUGCc-- -3'
miRNA:   3'- -ACGCGCGGCG---------UGCC---------UGUGUaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 106445 0.66 0.848746
Target:  5'- cUGCG-GCgGgCACGGGCGCugacgAUUGCAGu -3'
miRNA:   3'- -ACGCgCGgC-GUGCCUGUG-----UAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 117954 0.66 0.848746
Target:  5'- gGUGCGCCGCuugcgcuuguUGGACACua-GCGu- -3'
miRNA:   3'- aCGCGCGGCGu---------GCCUGUGuaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 118484 0.66 0.848746
Target:  5'- aUGUGCacuCUGUGCGGGCACAUguaguaugcguUGCAAu -3'
miRNA:   3'- -ACGCGc--GGCGUGCCUGUGUA-----------ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 32826 0.66 0.848746
Target:  5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3'
miRNA:   3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 110109 0.66 0.848746
Target:  5'- gUGCGCGCCgaGCGCuuGGGCACcg-GCc-- -3'
miRNA:   3'- -ACGCGCGG--CGUG--CCUGUGuaaCGuuu -5'
21335 5' -55.8 NC_004778.3 + 4607 0.66 0.848746
Target:  5'- cGCGUgccagGCCGCGCGauuccggacgaaGACACugUGCAAAa -3'
miRNA:   3'- aCGCG-----CGGCGUGC------------CUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 48772 0.66 0.848746
Target:  5'- gGuCGCGUCGCuAUGGuCGCAcgGCAAGu -3'
miRNA:   3'- aC-GCGCGGCG-UGCCuGUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 5111 0.66 0.840446
Target:  5'- aUGuCGCGgCGCACGcauGACGCGUUGgAc- -3'
miRNA:   3'- -AC-GCGCgGCGUGC---CUGUGUAACgUuu -5'
21335 5' -55.8 NC_004778.3 + 10836 0.66 0.840446
Target:  5'- --aGCGC--CugGGGCGCGUUGCGAGg -3'
miRNA:   3'- acgCGCGgcGugCCUGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 18780 0.66 0.835368
Target:  5'- gGCGCGCgGCguuuuuugcucacggGCguGGGCACGUaacuUGCAGAg -3'
miRNA:   3'- aCGCGCGgCG---------------UG--CCUGUGUA----ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 38755 0.66 0.835368
Target:  5'- uUGCGacgGCCgGCGCuuugcggaacauaguGGACGCGUUGCGc- -3'
miRNA:   3'- -ACGCg--CGG-CGUG---------------CCUGUGUAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 85460 0.66 0.831944
Target:  5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3'
miRNA:   3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 107922 0.66 0.831083
Target:  5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3'
miRNA:   3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 41822 0.67 0.823248
Target:  5'- -aCGCGCaCGCuguCGGAgGCGUUGgAGAa -3'
miRNA:   3'- acGCGCG-GCGu--GCCUgUGUAACgUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.