miRNA display CGI


Results 21 - 40 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 32594 0.68 0.767514
Target:  5'- gGCuGCGCCGCAUGcuGAUGCAgccgUGCGu- -3'
miRNA:   3'- aCG-CGCGGCGUGC--CUGUGUa---ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 32826 0.66 0.848746
Target:  5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3'
miRNA:   3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 33184 0.67 0.805312
Target:  5'- aGUGCGCCaGCACGcGGCAagggUGCu-- -3'
miRNA:   3'- aCGCGCGG-CGUGC-CUGUgua-ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 34430 0.67 0.775258
Target:  5'- gGCGUGCCcguacugcuguaCACGGGCACGcUGCGc- -3'
miRNA:   3'- aCGCGCGGc-----------GUGCCUGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 34590 0.68 0.737785
Target:  5'- aGCGUGCCcguguacagcaGUACGGGCACGccGCGc- -3'
miRNA:   3'- aCGCGCGG-----------CGUGCCUGUGUaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 35158 0.67 0.795158
Target:  5'- uUGCGCGuuGCACaccgugccuuccaGGuguGCGCAcUGCAAAc -3'
miRNA:   3'- -ACGCGCggCGUG-------------CC---UGUGUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 37859 0.66 0.864713
Target:  5'- cGaCGCGCaCGCGCaGACu--UUGCAAAg -3'
miRNA:   3'- aC-GCGCG-GCGUGcCUGuguAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 38122 0.67 0.823248
Target:  5'- cUGaCGCGCCGCuACGGcuGCGauuUUGCAu- -3'
miRNA:   3'- -AC-GCGCGGCG-UGCC--UGUgu-AACGUuu -5'
21335 5' -55.8 NC_004778.3 + 38755 0.66 0.835368
Target:  5'- uUGCGacgGCCgGCGCuuugcggaacauaguGGACGCGUUGCGc- -3'
miRNA:   3'- -ACGCg--CGG-CGUG---------------CCUGUGUAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 41219 0.67 0.823248
Target:  5'- uUGgGCaCCGCGCuGGACGCGcgacUGCGAGc -3'
miRNA:   3'- -ACgCGcGGCGUG-CCUGUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 41435 0.72 0.538748
Target:  5'- aGCGCGCuCGCcaagaugACGGACGUcgUGCAGGa -3'
miRNA:   3'- aCGCGCG-GCG-------UGCCUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 41822 0.67 0.823248
Target:  5'- -aCGCGCaCGCuguCGGAgGCGUUGgAGAa -3'
miRNA:   3'- acGCGCG-GCGu--GCCUgUGUAACgUUU- -5'
21335 5' -55.8 NC_004778.3 + 42339 0.67 0.786709
Target:  5'- aUGU-CGCCGCGCGGA-ACAUUGUu-- -3'
miRNA:   3'- -ACGcGCGGCGUGCCUgUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 42631 0.67 0.77718
Target:  5'- uUGCGUucccGCCGCcgACGGuGCACGagUGCAAGa -3'
miRNA:   3'- -ACGCG----CGGCG--UGCC-UGUGUa-ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 43146 0.72 0.539773
Target:  5'- gGCGCGCCGCACGuuuuugaACGCGgguuuggUGCAc- -3'
miRNA:   3'- aCGCGCGGCGUGCc------UGUGUa------ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 43730 0.74 0.4322
Target:  5'- gGgGCGCCGCGCcgGGACACAUcaUGUg-- -3'
miRNA:   3'- aCgCGCGGCGUG--CCUGUGUA--ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 47203 0.66 0.864713
Target:  5'- gGCGCGCUGCagaaaaucaaGCuGACGCAcgGCGu- -3'
miRNA:   3'- aCGCGCGGCG----------UGcCUGUGUaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 47544 0.68 0.737785
Target:  5'- cGCGCGCgCGUGCG-ACACGUcGCGc- -3'
miRNA:   3'- aCGCGCG-GCGUGCcUGUGUAaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 48080 0.68 0.761651
Target:  5'- gGUGUGCgGCGCGGACauuuaccacaauacgGCGguacUGCAGAa -3'
miRNA:   3'- aCGCGCGgCGUGCCUG---------------UGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 48772 0.66 0.848746
Target:  5'- gGuCGCGUCGCuAUGGuCGCAcgGCAAGu -3'
miRNA:   3'- aC-GCGCGGCG-UGCCuGUGUaaCGUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.