miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 129295 0.67 0.805312
Target:  5'- aUGCugGCGCUGUacgccGCGGACGCGccGCAGu -3'
miRNA:   3'- -ACG--CGCGGCG-----UGCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 124566 0.67 0.77718
Target:  5'- cGCGCGCCgagucacguagGCGCGcGCGCAacuuuuUUGCAGu -3'
miRNA:   3'- aCGCGCGG-----------CGUGCcUGUGU------AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 124220 0.69 0.686416
Target:  5'- aGCGCGCCgugcaucuGCACGaGCAC-UUGCAc- -3'
miRNA:   3'- aCGCGCGG--------CGUGCcUGUGuAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 121864 0.67 0.823248
Target:  5'- gGCGCGCCGacaACGugcccGACGCGggccUGCAc- -3'
miRNA:   3'- aCGCGCGGCg--UGC-----CUGUGUa---ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 121701 0.68 0.727667
Target:  5'- cGUGCaggcCCGCGuCGGGCACGUUGUc-- -3'
miRNA:   3'- aCGCGc---GGCGU-GCCUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 118868 0.68 0.767514
Target:  5'- cGCGCGCaCGCAacugaGGACAaa-UGCGu- -3'
miRNA:   3'- aCGCGCG-GCGUg----CCUGUguaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 118484 0.66 0.848746
Target:  5'- aUGUGCacuCUGUGCGGGCACAUguaguaugcguUGCAAu -3'
miRNA:   3'- -ACGCGc--GGCGUGCCUGUGUA-----------ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 117954 0.66 0.848746
Target:  5'- gGUGCGCCGCuugcgcuuguUGGACACua-GCGu- -3'
miRNA:   3'- aCGCGCGGCGu---------GCCUGUGuaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 115298 0.68 0.746809
Target:  5'- aUGCGCcgaaaaaauugagGCgGC-CGGccGCACAUUGCAAAu -3'
miRNA:   3'- -ACGCG-------------CGgCGuGCC--UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 114363 0.68 0.717461
Target:  5'- cUGCGCGCCGCggGCGaGGCcggcccuuGCGUaGCAAc -3'
miRNA:   3'- -ACGCGCGGCG--UGC-CUG--------UGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 112516 0.7 0.633843
Target:  5'- aUGUGCGCCGCguaACGGcuCGCGUUcGUAAGg -3'
miRNA:   3'- -ACGCGCGGCG---UGCCu-GUGUAA-CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 112221 0.71 0.564543
Target:  5'- aGCG-GCCGCGCGGuccaggugauagcacGCGgGUUGCGAGu -3'
miRNA:   3'- aCGCgCGGCGUGCC---------------UGUgUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 111907 0.67 0.77718
Target:  5'- gGCGCGCUGUGC-GugAUcgUGCAGu -3'
miRNA:   3'- aCGCGCGGCGUGcCugUGuaACGUUu -5'
21335 5' -55.8 NC_004778.3 + 110109 0.66 0.848746
Target:  5'- gUGCGCGCCgaGCGCuuGGGCACcg-GCc-- -3'
miRNA:   3'- -ACGCGCGG--CGUG--CCUGUGuaaCGuuu -5'
21335 5' -55.8 NC_004778.3 + 107922 0.66 0.831083
Target:  5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3'
miRNA:   3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 107700 0.67 0.796089
Target:  5'- gGCGCGCUGCucuGCGGuaagcgACGCG-UGCAu- -3'
miRNA:   3'- aCGCGCGGCG---UGCC------UGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 107693 0.69 0.675959
Target:  5'- uUGCGCGUggaggccgccaCGCGCGGucagagcaaaaACGCAUUGUGGAa -3'
miRNA:   3'- -ACGCGCG-----------GCGUGCC-----------UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 106461 0.68 0.767514
Target:  5'- aGCGCGCUGCGCGcGCAaaacgcGCAAc -3'
miRNA:   3'- aCGCGCGGCGUGCcUGUguaa--CGUUu -5'
21335 5' -55.8 NC_004778.3 + 106445 0.66 0.848746
Target:  5'- cUGCG-GCgGgCACGGGCGCugacgAUUGCAGu -3'
miRNA:   3'- -ACGCgCGgC-GUGCCUGUG-----UAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 103949 0.67 0.805312
Target:  5'- uUGCGCGCCaCACGuGCaaccguucuugGCGUUGCGGc -3'
miRNA:   3'- -ACGCGCGGcGUGCcUG-----------UGUAACGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.