miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 83232 0.69 0.707176
Target:  5'- gGCGgccaGCUGCACGGGCGauuggcugcguUGUUGCAGAc -3'
miRNA:   3'- aCGCg---CGGCGUGCCUGU-----------GUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 112221 0.71 0.564543
Target:  5'- aGCG-GCCGCGCGGuccaggugauagcacGCGgGUUGCGAGu -3'
miRNA:   3'- aCGCgCGGCGUGCC---------------UGUgUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 3231 0.71 0.581223
Target:  5'- gGCGCGCCGUgaucACGGACACcauacGCu-- -3'
miRNA:   3'- aCGCGCGGCG----UGCCUGUGuaa--CGuuu -5'
21335 5' -55.8 NC_004778.3 + 53733 0.71 0.5917
Target:  5'- cGCGCGCUGCGCGcaaauuAUACcgaGUUGCAAAa -3'
miRNA:   3'- aCGCGCGGCGUGCc-----UGUG---UAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 77365 0.71 0.5917
Target:  5'- gGCGCGCCGCGCGcuGGUGCAaUGCGc- -3'
miRNA:   3'- aCGCGCGGCGUGC--CUGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 9884 0.7 0.602208
Target:  5'- cGCGCcgccaaaguGCCGCcCGGGCGCGgugUGCGc- -3'
miRNA:   3'- aCGCG---------CGGCGuGCCUGUGUa--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 19189 0.7 0.602208
Target:  5'- cGCaaaGUGUCGCGCGGGCACcUUGguGAc -3'
miRNA:   3'- aCG---CGCGGCGUGCCUGUGuAACguUU- -5'
21335 5' -55.8 NC_004778.3 + 112516 0.7 0.633843
Target:  5'- aUGUGCGCCGCguaACGGcuCGCGUUcGUAAGg -3'
miRNA:   3'- -ACGCGCGGCG---UGCCu-GUGUAA-CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 107693 0.69 0.675959
Target:  5'- uUGCGCGUggaggccgccaCGCGCGGucagagcaaaaACGCAUUGUGGAa -3'
miRNA:   3'- -ACGCGCG-----------GCGUGCC-----------UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 43146 0.72 0.539773
Target:  5'- gGCGCGCCGCACGuuuuugaACGCGgguuuggUGCAc- -3'
miRNA:   3'- aCGCGCGGCGUGCc------UGUGUa------ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 95007 0.72 0.519416
Target:  5'- cGCGCGCCGUgcgccgACGGGCAgG-UGCGc- -3'
miRNA:   3'- aCGCGCGGCG------UGCCUGUgUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 22410 0.72 0.519416
Target:  5'- aGCGCcaGCgGUACGGGCGCGUcgGCAu- -3'
miRNA:   3'- aCGCG--CGgCGUGCCUGUGUAa-CGUuu -5'
21335 5' -55.8 NC_004778.3 + 10257 0.8 0.187246
Target:  5'- aGCGCGCCgauugcGCGCGGgaccggcgGCGCAUUGCAAAg -3'
miRNA:   3'- aCGCGCGG------CGUGCC--------UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 89588 0.77 0.279727
Target:  5'- aGuCGCGCCGCACGcGCGCAUUGUu-- -3'
miRNA:   3'- aC-GCGCGGCGUGCcUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 49841 0.76 0.322786
Target:  5'- cUGgGCcCCGCACGGGCGCGcUUGCGGg -3'
miRNA:   3'- -ACgCGcGGCGUGCCUGUGU-AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 95849 0.74 0.413991
Target:  5'- aUGCGCGCCguaaGCACGGGCgACAUgaccaGCGGu -3'
miRNA:   3'- -ACGCGCGG----CGUGCCUG-UGUAa----CGUUu -5'
21335 5' -55.8 NC_004778.3 + 43730 0.74 0.4322
Target:  5'- gGgGCGCCGCGCcgGGACACAUcaUGUg-- -3'
miRNA:   3'- aCgCGCGGCGUG--CCUGUGUA--ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 76289 0.74 0.4322
Target:  5'- cGCGCGCCGUgaACGGcuCGCAUUugGCAAGc -3'
miRNA:   3'- aCGCGCGGCG--UGCCu-GUGUAA--CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 5466 0.73 0.454654
Target:  5'- cUGCGCGCCugccauggccaacguGUACGGACGCuucUGCGGc -3'
miRNA:   3'- -ACGCGCGG---------------CGUGCCUGUGua-ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 86130 0.73 0.460366
Target:  5'- aUGCGCGCCgaguucaacgcGCACGGGC-CGUUugcGCAAAu -3'
miRNA:   3'- -ACGCGCGG-----------CGUGCCUGuGUAA---CGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.