miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 32826 0.66 0.848746
Target:  5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3'
miRNA:   3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 103949 0.67 0.805312
Target:  5'- uUGCGCGCCaCACGuGCaaccguucuugGCGUUGCGGc -3'
miRNA:   3'- -ACGCGCGGcGUGCcUG-----------UGUAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 107700 0.67 0.796089
Target:  5'- gGCGCGCUGCucuGCGGuaagcgACGCG-UGCAu- -3'
miRNA:   3'- aCGCGCGGCG---UGCC------UGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 75649 0.72 0.49937
Target:  5'- cGCGUGCCGCACuagcguuaaGGAgCGCAagUGCAGGu -3'
miRNA:   3'- aCGCGCGGCGUG---------CCU-GUGUa-ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 117954 0.66 0.848746
Target:  5'- gGUGCGCCGCuugcgcuuguUGGACACua-GCGu- -3'
miRNA:   3'- aCGCGCGGCGu---------GCCUGUGuaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 118484 0.66 0.848746
Target:  5'- aUGUGCacuCUGUGCGGGCACAUguaguaugcguUGCAAu -3'
miRNA:   3'- -ACGCGc--GGCGUGCCUGUGUA-----------ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 5111 0.66 0.840446
Target:  5'- aUGuCGCGgCGCACGcauGACGCGUUGgAc- -3'
miRNA:   3'- -AC-GCGCgGCGUGC---CUGUGUAACgUuu -5'
21335 5' -55.8 NC_004778.3 + 18780 0.66 0.835368
Target:  5'- gGCGCGCgGCguuuuuugcucacggGCguGGGCACGUaacuUGCAGAg -3'
miRNA:   3'- aCGCGCGgCG---------------UG--CCUGUGUA----ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 107922 0.66 0.831083
Target:  5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3'
miRNA:   3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 33184 0.67 0.805312
Target:  5'- aGUGCGCCaGCACGcGGCAagggUGCu-- -3'
miRNA:   3'- aCGCGCGG-CGUGC-CUGUgua-ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 121864 0.67 0.823248
Target:  5'- gGCGCGCCGacaACGugcccGACGCGggccUGCAc- -3'
miRNA:   3'- aCGCGCGGCg--UGC-----CUGUGUa---ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 85460 0.66 0.831944
Target:  5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3'
miRNA:   3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 4607 0.66 0.848746
Target:  5'- cGCGUgccagGCCGCGCGauuccggacgaaGACACugUGCAAAa -3'
miRNA:   3'- aCGCG-----CGGCGUGC------------CUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 41219 0.67 0.823248
Target:  5'- uUGgGCaCCGCGCuGGACGCGcgacUGCGAGc -3'
miRNA:   3'- -ACgCGcGGCGUG-CCUGUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 48772 0.66 0.848746
Target:  5'- gGuCGCGUCGCuAUGGuCGCAcgGCAAGu -3'
miRNA:   3'- aC-GCGCGGCG-UGCCuGUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 38755 0.66 0.835368
Target:  5'- uUGCGacgGCCgGCGCuuugcggaacauaguGGACGCGUUGCGc- -3'
miRNA:   3'- -ACGCg--CGG-CGUG---------------CCUGUGUAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 75903 0.67 0.805312
Target:  5'- cGCcaGCGCCGaggaGCGcGACAUuUUGCGAAc -3'
miRNA:   3'- aCG--CGCGGCg---UGC-CUGUGuAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 19339 0.67 0.796089
Target:  5'- gGUGC-CCGCGC-GACACuUUGCGAc -3'
miRNA:   3'- aCGCGcGGCGUGcCUGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 106445 0.66 0.848746
Target:  5'- cUGCG-GCgGgCACGGGCGCugacgAUUGCAGu -3'
miRNA:   3'- -ACGCgCGgC-GUGCCUGUG-----UAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 97542 0.66 0.848746
Target:  5'- uUGCGCGCCGCcacacgaugGCGGucagcaaauACGCGaUGCc-- -3'
miRNA:   3'- -ACGCGCGGCG---------UGCC---------UGUGUaACGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.