miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 3' -64.8 NC_004778.3 + 47127 0.68 0.377325
Target:  5'- cGCGUCGGCgugaGCGCcgGCGCUUUCGcUGc -3'
miRNA:   3'- -CGCGGCCGg---CGCGa-CGCGGAGGC-ACc -5'
21336 3' -64.8 NC_004778.3 + 48638 0.68 0.409198
Target:  5'- cGCGaCCGGCCGuUGCcGCGUCUauaaccgcgaUUGUGGu -3'
miRNA:   3'- -CGC-GGCCGGC-GCGaCGCGGA----------GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 49114 0.7 0.298644
Target:  5'- uGCGCUGGCaGCGCauCGaCC-CCGUGGg -3'
miRNA:   3'- -CGCGGCCGgCGCGacGC-GGaGGCACC- -5'
21336 3' -64.8 NC_004778.3 + 49389 0.68 0.409198
Target:  5'- gGgGCCGGCCaGCGCcGCGUaCUCgGUa- -3'
miRNA:   3'- -CgCGGCCGG-CGCGaCGCG-GAGgCAcc -5'
21336 3' -64.8 NC_004778.3 + 51138 0.69 0.325704
Target:  5'- aCGCCGGCgCGCgGCUGaagcacuuugcCGCCUUCGUa- -3'
miRNA:   3'- cGCGGCCG-GCG-CGAC-----------GCGGAGGCAcc -5'
21336 3' -64.8 NC_004778.3 + 51277 0.67 0.424914
Target:  5'- cGCGCCGG-CGUGUacgaauuUGCGUUUUCGcUGGa -3'
miRNA:   3'- -CGCGGCCgGCGCG-------ACGCGGAGGC-ACC- -5'
21336 3' -64.8 NC_004778.3 + 53286 0.66 0.504805
Target:  5'- aCGCCGGCgGCgguuGCUGUGgCggcgguugCUGUGGc -3'
miRNA:   3'- cGCGGCCGgCG----CGACGCgGa-------GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 57104 0.66 0.504805
Target:  5'- cGCGCacuccaacuuuaCGGCgGUGCUGgGCC-CCGacGGa -3'
miRNA:   3'- -CGCG------------GCCGgCGCGACgCGGaGGCa-CC- -5'
21336 3' -64.8 NC_004778.3 + 57764 0.66 0.504805
Target:  5'- aCGCCcGCCGCGCcaaGCGCCacacguauUCCGa-- -3'
miRNA:   3'- cGCGGcCGGCGCGa--CGCGG--------AGGCacc -5'
21336 3' -64.8 NC_004778.3 + 57948 0.66 0.477689
Target:  5'- cGCGCgCGcCUGCGCUGCGCUggcugcaaagCCaUGGc -3'
miRNA:   3'- -CGCG-GCcGGCGCGACGCGGa---------GGcACC- -5'
21336 3' -64.8 NC_004778.3 + 60114 0.68 0.377325
Target:  5'- cGCGCUGGCCGUGUUuaGCC-UgGUGu -3'
miRNA:   3'- -CGCGGCCGGCGCGAcgCGGaGgCACc -5'
21336 3' -64.8 NC_004778.3 + 60402 0.66 0.494782
Target:  5'- aGCGUguuucugCGGCUGCGCuUGCGCUUCaggccgauCGUGc -3'
miRNA:   3'- -CGCG-------GCCGGCGCG-ACGCGGAG--------GCACc -5'
21336 3' -64.8 NC_004778.3 + 61633 0.66 0.49569
Target:  5'- gGCGCCGcGCagccaGCGC-GCGCCaacgCCGcgcgcaugcUGGg -3'
miRNA:   3'- -CGCGGC-CGg----CGCGaCGCGGa---GGC---------ACC- -5'
21336 3' -64.8 NC_004778.3 + 61715 0.71 0.244202
Target:  5'- -aGuuGGCCGuCGUUGCGCCUCaCGa-- -3'
miRNA:   3'- cgCggCCGGC-GCGACGCGGAG-GCacc -5'
21336 3' -64.8 NC_004778.3 + 61780 0.72 0.202971
Target:  5'- cGCGCUGGCUGCGCgGCGCCaaaCGc-- -3'
miRNA:   3'- -CGCGGCCGGCGCGaCGCGGag-GCacc -5'
21336 3' -64.8 NC_004778.3 + 64161 0.7 0.285781
Target:  5'- cGCGCCcguGGCCGCcgaGCuUGaCGCgUUCGUGGu -3'
miRNA:   3'- -CGCGG---CCGGCG---CG-AC-GCGgAGGCACC- -5'
21336 3' -64.8 NC_004778.3 + 65903 0.68 0.409198
Target:  5'- cGC-CCGGCU-CGCUGCGCCaaacgCCGUc- -3'
miRNA:   3'- -CGcGGCCGGcGCGACGCGGa----GGCAcc -5'
21336 3' -64.8 NC_004778.3 + 77393 0.69 0.318771
Target:  5'- cGCGCCGGCCGCGU--CGCU--UGUGa -3'
miRNA:   3'- -CGCGGCCGGCGCGacGCGGagGCACc -5'
21336 3' -64.8 NC_004778.3 + 81773 0.68 0.401073
Target:  5'- uGCGCCGGUagGUGC-GCGgCCUgCCG-GGg -3'
miRNA:   3'- -CGCGGCCGg-CGCGaCGC-GGA-GGCaCC- -5'
21336 3' -64.8 NC_004778.3 + 91378 0.67 0.442697
Target:  5'- cGCaGUCGGCUGaGCUGUGCCUCUu--- -3'
miRNA:   3'- -CG-CGGCCGGCgCGACGCGGAGGcacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.