miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 5' -62 NC_004778.3 + 118741 0.66 0.597545
Target:  5'- -uGCCG-CACCcgCCaCCAG-GACGUGg -3'
miRNA:   3'- uuCGGCgGUGGuaGG-GGUCgCUGCGC- -5'
21337 5' -62 NC_004778.3 + 108399 0.66 0.597545
Target:  5'- -cGCCGCCgACCAcgcuuUUgCC-GCGGCGCa -3'
miRNA:   3'- uuCGGCGG-UGGU-----AGgGGuCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 65453 0.66 0.597545
Target:  5'- -cGUaaaaaGUgACCAUUUCCAGCGACGUa -3'
miRNA:   3'- uuCGg----CGgUGGUAGGGGUCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 39353 0.66 0.596546
Target:  5'- cGAGUCGCUuagcgccugcaugACCGUagCgGGCGACGCGg -3'
miRNA:   3'- -UUCGGCGG-------------UGGUAggGgUCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 33615 0.66 0.587568
Target:  5'- cGAGCaCGCCGCCGUgCggaCGGCcGCGCu -3'
miRNA:   3'- -UUCG-GCGGUGGUAgGg--GUCGcUGCGc -5'
21337 5' -62 NC_004778.3 + 95022 0.66 0.557849
Target:  5'- -uGUCGCCGCuCAUguuugcaaugugUCCguGCGGCGCGc -3'
miRNA:   3'- uuCGGCGGUG-GUA------------GGGguCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 58102 0.66 0.548034
Target:  5'- -uGCCGCCGCCGcgccucgagCCCCAcgaguuaaacgcGCcGACGCc -3'
miRNA:   3'- uuCGGCGGUGGUa--------GGGGU------------CG-CUGCGc -5'
21337 5' -62 NC_004778.3 + 95758 0.67 0.538274
Target:  5'- gGAGCCGCgccgggCGCUAUCCgCgCGGCaGCGCGc -3'
miRNA:   3'- -UUCGGCG------GUGGUAGG-G-GUCGcUGCGC- -5'
21337 5' -62 NC_004778.3 + 83117 0.67 0.538274
Target:  5'- uAAGCCGCCGCCAUgagCgUCAcCGAUGUGc -3'
miRNA:   3'- -UUCGGCGGUGGUA---GgGGUcGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 118925 0.67 0.538274
Target:  5'- cGGCCG-CGCCGcgCCCgaAGCGugGCa -3'
miRNA:   3'- uUCGGCgGUGGUa-GGGg-UCGCugCGc -5'
21337 5' -62 NC_004778.3 + 35994 0.67 0.535357
Target:  5'- cAGuCCGCCACUGgcCCCCAaggcgcuuguugguGCGGCGCc -3'
miRNA:   3'- uUC-GGCGGUGGUa-GGGGU--------------CGCUGCGc -5'
21337 5' -62 NC_004778.3 + 8890 0.67 0.528574
Target:  5'- uGGCgCGCCACgG-CgCCGGCGGCGUc -3'
miRNA:   3'- uUCG-GCGGUGgUaGgGGUCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 36683 0.67 0.518939
Target:  5'- cGGCgCGUCAUgGUCCaaAGCGGCGCc -3'
miRNA:   3'- uUCG-GCGGUGgUAGGggUCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 117628 0.67 0.518939
Target:  5'- -cGCCGaCACgagCAUCCCCGGCGA-GCc -3'
miRNA:   3'- uuCGGCgGUG---GUAGGGGUCGCUgCGc -5'
21337 5' -62 NC_004778.3 + 61509 0.67 0.503671
Target:  5'- -cGCCGgCGCCGUCCgcacaugaagccgaaCCuGCGGCGUa -3'
miRNA:   3'- uuCGGCgGUGGUAGG---------------GGuCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 16131 0.67 0.499884
Target:  5'- uGGGCCGCCACgCGaacaacuucgacUCgCUguGCGACGUGc -3'
miRNA:   3'- -UUCGGCGGUG-GU------------AG-GGguCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 32423 0.67 0.499884
Target:  5'- -cGgCGCCGCCGg--CCAGCGuGCGCGg -3'
miRNA:   3'- uuCgGCGGUGGUaggGGUCGC-UGCGC- -5'
21337 5' -62 NC_004778.3 + 12917 0.67 0.489537
Target:  5'- aAGGCCG-CAUCGUCCCCAagcucgcccgacaGCGgaaucgGCGCGg -3'
miRNA:   3'- -UUCGGCgGUGGUAGGGGU-------------CGC------UGCGC- -5'
21337 5' -62 NC_004778.3 + 28955 0.68 0.481146
Target:  5'- cGGCCGCgGCguUUCCUuGCGAUGCu -3'
miRNA:   3'- uUCGGCGgUGguAGGGGuCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 116751 0.68 0.435883
Target:  5'- aAAGCuCGCCGCCGgucggCUgaCUGGCGACGUGu -3'
miRNA:   3'- -UUCG-GCGGUGGUa----GG--GGUCGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.