miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 3' -44.7 NC_004778.3 + 76760 0.65 0.999994
Target:  5'- -gACAACCauucucucCGCCAGCAGCg-- -3'
miRNA:   3'- agUGUUGGaaaua---GCGGUUGUUGaug -5'
21340 3' -44.7 NC_004778.3 + 25339 0.66 0.999992
Target:  5'- -gGCGGCCaUUUGUCGCggCGACAuaaauuCUACc -3'
miRNA:   3'- agUGUUGG-AAAUAGCG--GUUGUu-----GAUG- -5'
21340 3' -44.7 NC_004778.3 + 3800 0.66 0.999992
Target:  5'- gCACAAaaug-GUUGCUAAUGGCUACg -3'
miRNA:   3'- aGUGUUggaaaUAGCGGUUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 84680 0.66 0.999992
Target:  5'- aUCACGGCCUUaGUCGauucgauGCAACcugGCg -3'
miRNA:   3'- -AGUGUUGGAAaUAGCggu----UGUUGa--UG- -5'
21340 3' -44.7 NC_004778.3 + 63918 0.66 0.999992
Target:  5'- -gACGACCUUUu---CCaAGCGACUGCg -3'
miRNA:   3'- agUGUUGGAAAuagcGG-UUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 69805 0.66 0.999992
Target:  5'- cUCGCGACCgcgUGUCGCgAcacaucGCAucGCUGa -3'
miRNA:   3'- -AGUGUUGGaa-AUAGCGgU------UGU--UGAUg -5'
21340 3' -44.7 NC_004778.3 + 93288 0.66 0.999992
Target:  5'- gUCGCGACaacugcgugAUCGCCAGC-GCgGCg -3'
miRNA:   3'- -AGUGUUGgaaa-----UAGCGGUUGuUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 78546 0.66 0.999992
Target:  5'- -gGCGGCCagUUGUUGUgG-CAACUGCg -3'
miRNA:   3'- agUGUUGGa-AAUAGCGgUuGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 10766 0.66 0.999992
Target:  5'- gCACAAgCU--GUCG-UAACGGCUGCa -3'
miRNA:   3'- aGUGUUgGAaaUAGCgGUUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 55443 0.66 0.999992
Target:  5'- uUCuuCGGCCgcugcgcgCGCCAGCGACUcguACa -3'
miRNA:   3'- -AGu-GUUGGaaaua---GCGGUUGUUGA---UG- -5'
21340 3' -44.7 NC_004778.3 + 47882 0.66 0.999992
Target:  5'- cCACAagGCUUg---CGCCAGCGGCa-- -3'
miRNA:   3'- aGUGU--UGGAaauaGCGGUUGUUGaug -5'
21340 3' -44.7 NC_004778.3 + 85447 0.66 0.999989
Target:  5'- aCGCAGCagg-GUCGCCAAUcACcGCc -3'
miRNA:   3'- aGUGUUGgaaaUAGCGGUUGuUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 36250 0.66 0.999984
Target:  5'- aCGCGGCUUUUuggCGCCAACGc---- -3'
miRNA:   3'- aGUGUUGGAAAua-GCGGUUGUugaug -5'
21340 3' -44.7 NC_004778.3 + 50945 0.66 0.999984
Target:  5'- aUCGCGACaCUUUuuuagcucgcugcGUUGCUugAGCAAUUGCa -3'
miRNA:   3'- -AGUGUUG-GAAA-------------UAGCGG--UUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 47802 0.66 0.999984
Target:  5'- gCGCGACUUUUgccugGUUGCCAGCucgaacGCUAg -3'
miRNA:   3'- aGUGUUGGAAA-----UAGCGGUUGu-----UGAUg -5'
21340 3' -44.7 NC_004778.3 + 33833 0.66 0.999982
Target:  5'- -gGCAGCCUgcgcgcucaaCGCCGAUAACcGCu -3'
miRNA:   3'- agUGUUGGAaaua------GCGGUUGUUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 38131 0.66 0.999978
Target:  5'- gCAUGACUgcugacgCGCCGcuACGGCUGCg -3'
miRNA:   3'- aGUGUUGGaaaua--GCGGU--UGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 26065 0.66 0.999978
Target:  5'- -aACAGCCUgcaagCGCCcAGCGACg-- -3'
miRNA:   3'- agUGUUGGAaaua-GCGG-UUGUUGaug -5'
21340 3' -44.7 NC_004778.3 + 88359 0.67 0.99997
Target:  5'- -gGCGGCCg----CGCCGGCAACc-- -3'
miRNA:   3'- agUGUUGGaaauaGCGGUUGUUGaug -5'
21340 3' -44.7 NC_004778.3 + 36825 0.67 0.99997
Target:  5'- cCACGGCCg-----GCCuaAACGACUGCg -3'
miRNA:   3'- aGUGUUGGaaauagCGG--UUGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.