miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 47674 0.66 0.769126
Target:  5'- -cGCAGUCGgugUUGGCGCCgGgaaaaaUGCCCaGCc -3'
miRNA:   3'- gaCGUUAGC---AGUCGCGGgC------ACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 48671 0.69 0.589797
Target:  5'- uUGUggUCG-CGGUGCUgcugGUGCCUGCg -3'
miRNA:   3'- gACGuuAGCaGUCGCGGg---CACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 60496 0.68 0.681112
Target:  5'- gCUGCcgcgccUCGUUgauGCgcauGCCCGUGCCCaGCa -3'
miRNA:   3'- -GACGuu----AGCAGu--CG----CGGGCACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 64154 0.75 0.314853
Target:  5'- -aGCg--CGUC-GCGCCCGUGgCCGCc -3'
miRNA:   3'- gaCGuuaGCAGuCGCGGGCACgGGCG- -5'
21340 5' -58.4 NC_004778.3 + 64592 0.67 0.721013
Target:  5'- gUGUAGUUGUCGGgGCauuCGcGCaCCGCg -3'
miRNA:   3'- gACGUUAGCAGUCgCGg--GCaCG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 64960 0.71 0.510442
Target:  5'- -gGCaAAUCGgcgCAGCGCgCGUcGCCCGa -3'
miRNA:   3'- gaCG-UUAGCa--GUCGCGgGCA-CGGGCg -5'
21340 5' -58.4 NC_004778.3 + 66737 0.66 0.750179
Target:  5'- -aGCAcUCGcuuuUCgAGaCGCUCGUGCCCGa -3'
miRNA:   3'- gaCGUuAGC----AG-UC-GCGGGCACGGGCg -5'
21340 5' -58.4 NC_004778.3 + 69780 0.68 0.681112
Target:  5'- -cGCGAgaacCGagaGGCGgCCGUGCCuCGCg -3'
miRNA:   3'- gaCGUUa---GCag-UCGCgGGCACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 83400 0.66 0.769126
Target:  5'- uCUGCAAcaaCG-CAGCcaaucGCCCGUGCagcuggccgCCGCu -3'
miRNA:   3'- -GACGUUa--GCaGUCG-----CGGGCACG---------GGCG- -5'
21340 5' -58.4 NC_004778.3 + 90543 0.67 0.691169
Target:  5'- gCUGCAgcGUCGgauaguggCAGCGCUCGccGCCgaGCg -3'
miRNA:   3'- -GACGU--UAGCa-------GUCGCGGGCa-CGGg-CG- -5'
21340 5' -58.4 NC_004778.3 + 91773 0.67 0.701177
Target:  5'- -gGCGAuuaUCGcuucuUUAGCGCCCGUGCgcaUCGUg -3'
miRNA:   3'- gaCGUU---AGC-----AGUCGCGGGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 93890 0.66 0.77286
Target:  5'- -aGCAAaacgUGuuUCGGCGCUCGUauauaacgcacauccGCCCGCu -3'
miRNA:   3'- gaCGUUa---GC--AGUCGCGGGCA---------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 94785 0.66 0.769126
Target:  5'- gUGCAGUUGcCuGCgGCCCGgGCUCGg -3'
miRNA:   3'- gACGUUAGCaGuCG-CGGGCaCGGGCg -5'
21340 5' -58.4 NC_004778.3 + 95160 0.66 0.750179
Target:  5'- cCUGCc--CGUCGGCGCaCG-GCgCGCg -3'
miRNA:   3'- -GACGuuaGCAGUCGCGgGCaCGgGCG- -5'
21340 5' -58.4 NC_004778.3 + 95407 0.74 0.329428
Target:  5'- gUGCGGUCGccgCGGCGCaCCaUGCCCGa -3'
miRNA:   3'- gACGUUAGCa--GUCGCG-GGcACGGGCg -5'
21340 5' -58.4 NC_004778.3 + 98743 0.66 0.750179
Target:  5'- gUGCuucguGUUGUagCAGCGCgCGUGCaagCCGCc -3'
miRNA:   3'- gACGu----UAGCA--GUCGCGgGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 106054 0.66 0.778423
Target:  5'- -aGaCAAgUGUCGGCGCCgCGUguuuuaauaacaGCCCGUc -3'
miRNA:   3'- gaC-GUUaGCAGUCGCGG-GCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 106285 1.11 0.001105
Target:  5'- aCUGCAAUCGUCAGCGCCCGUGCCCGCc -3'
miRNA:   3'- -GACGUUAGCAGUCGCGGGCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 107656 0.71 0.500811
Target:  5'- -aGUGAUCGUUccgaCGCCCGUGUCgCGCg -3'
miRNA:   3'- gaCGUUAGCAGuc--GCGGGCACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 108613 0.67 0.730823
Target:  5'- -cGCAG-CG-CAGCuGUCCGUacaacaaauacaGCCCGCg -3'
miRNA:   3'- gaCGUUaGCaGUCG-CGGGCA------------CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.