miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 14500 0.66 0.769126
Target:  5'- gUGCGAUUG-CGGCGacgagaCCGUGaCgCGCg -3'
miRNA:   3'- gACGUUAGCaGUCGCg-----GGCAC-GgGCG- -5'
21340 5' -58.4 NC_004778.3 + 14718 0.66 0.78759
Target:  5'- uUGCAuUCGa-GGUGCCCGguucguaCCCGCu -3'
miRNA:   3'- gACGUuAGCagUCGCGGGCac-----GGGCG- -5'
21340 5' -58.4 NC_004778.3 + 17326 0.67 0.711128
Target:  5'- gUGCAGUCG-CGGUGCCCGcGCg--- -3'
miRNA:   3'- gACGUUAGCaGUCGCGGGCaCGggcg -5'
21340 5' -58.4 NC_004778.3 + 20937 0.66 0.750179
Target:  5'- -cGCAGcccaGcCGGcCGCCCGauUGCCCGUa -3'
miRNA:   3'- gaCGUUag--CaGUC-GCGGGC--ACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 21083 0.66 0.79662
Target:  5'- -cGaCAggCGUCAGCGCggugcaGCCCGCg -3'
miRNA:   3'- gaC-GUuaGCAGUCGCGggca--CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 25753 0.66 0.769126
Target:  5'- -aGCAG-CGUCAGUGUCgGcagGCCgGCc -3'
miRNA:   3'- gaCGUUaGCAGUCGCGGgCa--CGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 33077 0.7 0.520148
Target:  5'- -cGCAA-CGgugCAGCgGCCCGcUGCCgCGCu -3'
miRNA:   3'- gaCGUUaGCa--GUCG-CGGGC-ACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 33374 0.69 0.589797
Target:  5'- gCUGCGGUUGUgCGgacuuGCGCCCG-GCCgaGCg -3'
miRNA:   3'- -GACGUUAGCA-GU-----CGCGGGCaCGGg-CG- -5'
21340 5' -58.4 NC_004778.3 + 33517 0.67 0.730823
Target:  5'- -gGCGcGUCGUCcGCGa-CGUcGCCCGCg -3'
miRNA:   3'- gaCGU-UAGCAGuCGCggGCA-CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 34414 0.71 0.472423
Target:  5'- gCUGCuc-CGgCAGCGCggCGUGCCCGUa -3'
miRNA:   3'- -GACGuuaGCaGUCGCGg-GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 34608 0.67 0.740548
Target:  5'- gUGCGcUCcUCGacGCGCagCGUGCCCGUg -3'
miRNA:   3'- gACGUuAGcAGU--CGCGg-GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 35193 0.67 0.711128
Target:  5'- aCUGCAAaCGcagcuugacuUUGGCGCCCGccgugucguaccUGCCCuGCg -3'
miRNA:   3'- -GACGUUaGC----------AGUCGCGGGC------------ACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 36624 0.71 0.510442
Target:  5'- uCUGCAGUCGcugacCGGCauuuuGCgCGUGCCCaGCa -3'
miRNA:   3'- -GACGUUAGCa----GUCG-----CGgGCACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 36674 0.66 0.79662
Target:  5'- -cGCAGUCGUUuaGGcCGgCCGUGggcaacaCCGCg -3'
miRNA:   3'- gaCGUUAGCAG--UC-GCgGGCACg------GGCG- -5'
21340 5' -58.4 NC_004778.3 + 38116 0.66 0.765373
Target:  5'- -cGCAcgcCGUCcGCGUCCGcagugaagcgcagGCCCGCu -3'
miRNA:   3'- gaCGUua-GCAGuCGCGGGCa------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 38505 0.66 0.759708
Target:  5'- -cGCGAcgCGuUCGGCGUCCaUGCCUuGCa -3'
miRNA:   3'- gaCGUUa-GC-AGUCGCGGGcACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 39394 0.66 0.769126
Target:  5'- -cGUAGUUGUgGG-GCCCGgUGCUgGCg -3'
miRNA:   3'- gaCGUUAGCAgUCgCGGGC-ACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 39587 0.68 0.660886
Target:  5'- -cGCAauaGUCGgcaaagCGGCGCCgGUGCUCa- -3'
miRNA:   3'- gaCGU---UAGCa-----GUCGCGGgCACGGGcg -5'
21340 5' -58.4 NC_004778.3 + 43123 0.66 0.778423
Target:  5'- -cGCAAgcgcuUCGaCGGCGCCgCGgcGCgCCGCa -3'
miRNA:   3'- gaCGUU-----AGCaGUCGCGG-GCa-CG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 43570 0.67 0.740548
Target:  5'- -cGCuGUCGUCGcUGUCCGccgGCUCGCa -3'
miRNA:   3'- gaCGuUAGCAGUcGCGGGCa--CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.