miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 106285 1.11 0.001105
Target:  5'- aCUGCAAUCGUCAGCGCCCGUGCCCGCc -3'
miRNA:   3'- -GACGUUAGCAGUCGCGGGCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 64154 0.75 0.314853
Target:  5'- -aGCg--CGUC-GCGCCCGUGgCCGCc -3'
miRNA:   3'- gaCGuuaGCAGuCGCGGGCACgGGCG- -5'
21340 5' -58.4 NC_004778.3 + 95407 0.74 0.329428
Target:  5'- gUGCGGUCGccgCGGCGCaCCaUGCCCGa -3'
miRNA:   3'- gACGUUAGCa--GUCGCG-GGcACGGGCg -5'
21340 5' -58.4 NC_004778.3 + 120134 0.72 0.453955
Target:  5'- -aGCAAUCGUagggguuGCGCUC-UGCCUGCg -3'
miRNA:   3'- gaCGUUAGCAgu-----CGCGGGcACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 34414 0.71 0.472423
Target:  5'- gCUGCuc-CGgCAGCGCggCGUGCCCGUa -3'
miRNA:   3'- -GACGuuaGCaGUCGCGg-GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 107656 0.71 0.500811
Target:  5'- -aGUGAUCGUUccgaCGCCCGUGUCgCGCg -3'
miRNA:   3'- gaCGUUAGCAGuc--GCGGGCACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 36624 0.71 0.510442
Target:  5'- uCUGCAGUCGcugacCGGCauuuuGCgCGUGCCCaGCa -3'
miRNA:   3'- -GACGUUAGCa----GUCG-----CGgGCACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 64960 0.71 0.510442
Target:  5'- -gGCaAAUCGgcgCAGCGCgCGUcGCCCGa -3'
miRNA:   3'- gaCG-UUAGCa--GUCGCGgGCA-CGGGCg -5'
21340 5' -58.4 NC_004778.3 + 33077 0.7 0.520148
Target:  5'- -cGCAA-CGgugCAGCgGCCCGcUGCCgCGCu -3'
miRNA:   3'- gaCGUUaGCa--GUCG-CGGGC-ACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 124230 0.7 0.549678
Target:  5'- -cGCGcgCaUCAGCGCgCCGUGCauCUGCa -3'
miRNA:   3'- gaCGUuaGcAGUCGCG-GGCACG--GGCG- -5'
21340 5' -58.4 NC_004778.3 + 48671 0.69 0.589797
Target:  5'- uUGUggUCG-CGGUGCUgcugGUGCCUGCg -3'
miRNA:   3'- gACGuuAGCaGUCGCGGg---CACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 33374 0.69 0.589797
Target:  5'- gCUGCGGUUGUgCGgacuuGCGCCCG-GCCgaGCg -3'
miRNA:   3'- -GACGUUAGCA-GU-----CGCGGGCaCGGg-CG- -5'
21340 5' -58.4 NC_004778.3 + 118586 0.69 0.620226
Target:  5'- uUGCGAUaca-GGCGCgCCGUGCaacCCGCa -3'
miRNA:   3'- gACGUUAgcagUCGCG-GGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 111274 0.69 0.630397
Target:  5'- -aGCAAUgcgCGUUAGCGCCU-UGgCCGCc -3'
miRNA:   3'- gaCGUUA---GCAGUCGCGGGcACgGGCG- -5'
21340 5' -58.4 NC_004778.3 + 117970 0.69 0.630397
Target:  5'- -cGUuGUCGUCGuCGCUgGUGCgCCGCu -3'
miRNA:   3'- gaCGuUAGCAGUcGCGGgCACG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 127071 0.69 0.630397
Target:  5'- gUGCcGUCGUgCA-CGCCCGgcgagUGCUCGCg -3'
miRNA:   3'- gACGuUAGCA-GUcGCGGGC-----ACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 121718 0.68 0.64057
Target:  5'- -gGCAcGUUGUCGGCGCgCCGUaGCUgGUu -3'
miRNA:   3'- gaCGU-UAGCAGUCGCG-GGCA-CGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 39587 0.68 0.660886
Target:  5'- -cGCAauaGUCGgcaaagCGGCGCCgGUGCUCa- -3'
miRNA:   3'- gaCGU---UAGCa-----GUCGCGGgCACGGGcg -5'
21340 5' -58.4 NC_004778.3 + 69780 0.68 0.681112
Target:  5'- -cGCGAgaacCGagaGGCGgCCGUGCCuCGCg -3'
miRNA:   3'- gaCGUUa---GCag-UCGCgGGCACGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 60496 0.68 0.681112
Target:  5'- gCUGCcgcgccUCGUUgauGCgcauGCCCGUGCCCaGCa -3'
miRNA:   3'- -GACGuu----AGCAGu--CG----CGGGCACGGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.