Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 38505 | 0.66 | 0.759708 |
Target: 5'- -cGCGAcgCGuUCGGCGUCCaUGCCUuGCa -3' miRNA: 3'- gaCGUUa-GC-AGUCGCGGGcACGGG-CG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 90543 | 0.67 | 0.691169 |
Target: 5'- gCUGCAgcGUCGgauaguggCAGCGCUCGccGCCgaGCg -3' miRNA: 3'- -GACGU--UAGCa-------GUCGCGGGCa-CGGg-CG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 91773 | 0.67 | 0.701177 |
Target: 5'- -gGCGAuuaUCGcuucuUUAGCGCCCGUGCgcaUCGUg -3' miRNA: 3'- gaCGUU---AGC-----AGUCGCGGGCACG---GGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 35193 | 0.67 | 0.711128 |
Target: 5'- aCUGCAAaCGcagcuugacuUUGGCGCCCGccgugucguaccUGCCCuGCg -3' miRNA: 3'- -GACGUUaGC----------AGUCGCGGGC------------ACGGG-CG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 112190 | 0.67 | 0.736668 |
Target: 5'- aCUGCAcuUCGuucUCGGCGCCCucgcgcauagcgGCCgCGCg -3' miRNA: 3'- -GACGUu-AGC---AGUCGCGGGca----------CGG-GCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 111709 | 0.67 | 0.740548 |
Target: 5'- uUGCAG-CGUCGGCGCCUccGaaaaCUGCu -3' miRNA: 3'- gACGUUaGCAGUCGCGGGcaCg---GGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 121312 | 0.66 | 0.750179 |
Target: 5'- gCUGCAGaUGgcuugCAGCuGCgCCGUGUCgGCg -3' miRNA: 3'- -GACGUUaGCa----GUCG-CG-GGCACGGgCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 20937 | 0.66 | 0.750179 |
Target: 5'- -cGCAGcccaGcCGGcCGCCCGauUGCCCGUa -3' miRNA: 3'- gaCGUUag--CaGUC-GCGGGC--ACGGGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 98743 | 0.66 | 0.750179 |
Target: 5'- gUGCuucguGUUGUagCAGCGCgCGUGCaagCCGCc -3' miRNA: 3'- gACGu----UAGCA--GUCGCGgGCACG---GGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 69780 | 0.68 | 0.681112 |
Target: 5'- -cGCGAgaacCGagaGGCGgCCGUGCCuCGCg -3' miRNA: 3'- gaCGUUa---GCag-UCGCgGGCACGG-GCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 60496 | 0.68 | 0.681112 |
Target: 5'- gCUGCcgcgccUCGUUgauGCgcauGCCCGUGCCCaGCa -3' miRNA: 3'- -GACGuu----AGCAGu--CG----CGGGCACGGG-CG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 121718 | 0.68 | 0.64057 |
Target: 5'- -gGCAcGUUGUCGGCGCgCCGUaGCUgGUu -3' miRNA: 3'- gaCGU-UAGCAGUCGCG-GGCA-CGGgCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 64154 | 0.75 | 0.314853 |
Target: 5'- -aGCg--CGUC-GCGCCCGUGgCCGCc -3' miRNA: 3'- gaCGuuaGCAGuCGCGGGCACgGGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 34414 | 0.71 | 0.472423 |
Target: 5'- gCUGCuc-CGgCAGCGCggCGUGCCCGUa -3' miRNA: 3'- -GACGuuaGCaGUCGCGg-GCACGGGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 107656 | 0.71 | 0.500811 |
Target: 5'- -aGUGAUCGUUccgaCGCCCGUGUCgCGCg -3' miRNA: 3'- gaCGUUAGCAGuc--GCGGGCACGG-GCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 36624 | 0.71 | 0.510442 |
Target: 5'- uCUGCAGUCGcugacCGGCauuuuGCgCGUGCCCaGCa -3' miRNA: 3'- -GACGUUAGCa----GUCG-----CGgGCACGGG-CG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 33077 | 0.7 | 0.520148 |
Target: 5'- -cGCAA-CGgugCAGCgGCCCGcUGCCgCGCu -3' miRNA: 3'- gaCGUUaGCa--GUCG-CGGGC-ACGG-GCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 48671 | 0.69 | 0.589797 |
Target: 5'- uUGUggUCG-CGGUGCUgcugGUGCCUGCg -3' miRNA: 3'- gACGuuAGCaGUCGCGGg---CACGGGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 111274 | 0.69 | 0.630397 |
Target: 5'- -aGCAAUgcgCGUUAGCGCCU-UGgCCGCc -3' miRNA: 3'- gaCGUUA---GCAGUCGCGGGcACgGGCG- -5' |
|||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 127071 | 0.69 | 0.630397 |
Target: 5'- gUGCcGUCGUgCA-CGCCCGgcgagUGCUCGCg -3' miRNA: 3'- gACGuUAGCA-GUcGCGGGC-----ACGGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home