miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 56113 0.67 0.995547
Target:  5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3'
miRNA:   3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 124444 0.67 0.995547
Target:  5'- gGCGcCGCGCuucagcauucuuGAAGCGCGCcgAGCUGc--- -3'
miRNA:   3'- -CGC-GCGCG------------UUUUGCGCG--UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 25690 0.67 0.995547
Target:  5'- -gGCGCGCG--AUGCGCGAUaAgcGGu -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 15049 0.67 0.995547
Target:  5'- aCGCGCuaaGCuuacAAUGCGCGauaaaacaaACUAUUGGc -3'
miRNA:   3'- cGCGCG---CGuu--UUGCGCGU---------UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 95850 0.67 0.995547
Target:  5'- uGCGCGcCGUAAGcACGgGCGACa----- -3'
miRNA:   3'- -CGCGC-GCGUUU-UGCgCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 54634 0.67 0.995547
Target:  5'- aGCGaugcaGCaGCGAGACGCGUugGACcagUGGu -3'
miRNA:   3'- -CGCg----CG-CGUUUUGCGCG--UUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 6392 0.67 0.994792
Target:  5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3'
miRNA:   3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 28551 0.67 0.994792
Target:  5'- aCGCGCuuuuGCAAAuCGCGCAAUUc--GGa -3'
miRNA:   3'- cGCGCG----CGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 70164 0.67 0.994792
Target:  5'- aUGCGCGCcaGAAugGCGUcGCUGc--- -3'
miRNA:   3'- cGCGCGCG--UUUugCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 37500 0.67 0.994792
Target:  5'- uGC-CGUGCAAGua--GCAAUUGUUGGg -3'
miRNA:   3'- -CGcGCGCGUUUugcgCGUUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 19126 0.67 0.994792
Target:  5'- cGgGCGCGCGAGcgGCGCuguuucgaacacGAC-AUUGGa -3'
miRNA:   3'- -CgCGCGCGUUUugCGCG------------UUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 36705 0.67 0.994792
Target:  5'- cGCGCuCGcCAAGACGCGCAcCgcc-GGc -3'
miRNA:   3'- -CGCGcGC-GUUUUGCGCGUuGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 16313 0.67 0.994792
Target:  5'- gGCGUcgGCGUGAuAACuGCGCAgucGCUGUUGa -3'
miRNA:   3'- -CGCG--CGCGUU-UUG-CGCGU---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 107943 0.67 0.994792
Target:  5'- cGCuaGCGCAGAcgaGCGCAACg----- -3'
miRNA:   3'- -CGcgCGCGUUUug-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 114732 0.67 0.994792
Target:  5'- cCGUGUGCAAAACGgcuCGCAAUUGc--- -3'
miRNA:   3'- cGCGCGCGUUUUGC---GCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 107399 0.67 0.994792
Target:  5'- -aGCcCGCAAAACGUuuaGCAuUUGUUGGu -3'
miRNA:   3'- cgCGcGCGUUUUGCG---CGUuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 38252 0.67 0.994792
Target:  5'- gGCGUGCGCGcua-GCGUG-CUGUUGc -3'
miRNA:   3'- -CGCGCGCGUuuugCGCGUuGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 127422 0.67 0.994711
Target:  5'- uUGUGCGCGGAAauuguuuUGCGCAgguagagcuuGCUggUGGg -3'
miRNA:   3'- cGCGCGCGUUUU-------GCGCGU----------UGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 76703 0.67 0.99463
Target:  5'- cGCGCGCuaGCGAAgguGCGCGaaggcauggucaAAgUAUUGGc -3'
miRNA:   3'- -CGCGCG--CGUUU---UGCGCg-----------UUgAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 96715 0.67 0.99463
Target:  5'- cGCGCGCGCGuguuaauuugauAACGCGCuuuu-UUGc -3'
miRNA:   3'- -CGCGCGCGUu-----------UUGCGCGuugauAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.