miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 10268 0.72 0.910155
Target:  5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3'
miRNA:   3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5'
21341 5' -49.2 NC_004778.3 + 10405 0.73 0.864294
Target:  5'- cCGCGCGCAAucGGCGCGCugcgcACUAa--- -3'
miRNA:   3'- cGCGCGCGUU--UUGCGCGu----UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 10897 0.77 0.681448
Target:  5'- gGCGCGCacacggcagcccGCGGAGCGCGCAGCg----- -3'
miRNA:   3'- -CGCGCG------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 11560 0.75 0.803395
Target:  5'- gGCGCgGCGCAAAGCGUGCAuuuGCgccUUGc -3'
miRNA:   3'- -CGCG-CGCGUUUUGCGCGU---UGau-AACc -5'
21341 5' -49.2 NC_004778.3 + 11774 0.68 0.986182
Target:  5'- uGCGCGgacccguuaaaGCAAAACGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCg----------CGUUUUGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 12639 0.69 0.982364
Target:  5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3'
miRNA:   3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 14247 0.71 0.950777
Target:  5'- uCGCGguUGCAAu-CGCGCGguacGCUAUUGGu -3'
miRNA:   3'- cGCGC--GCGUUuuGCGCGU----UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 14363 0.72 0.919978
Target:  5'- aUGCGCuGCAAcGCGCGCGACa----- -3'
miRNA:   3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 14803 0.69 0.97522
Target:  5'- cCGCGUGCAGuacgacgacACGCGCGGCUuacUGa -3'
miRNA:   3'- cGCGCGCGUUu--------UGCGCGUUGAua-ACc -5'
21341 5' -49.2 NC_004778.3 + 15049 0.67 0.995547
Target:  5'- aCGCGCuaaGCuuacAAUGCGCGauaaaacaaACUAUUGGc -3'
miRNA:   3'- cGCGCG---CGuu--UUGCGCGU---------UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 15160 0.68 0.986182
Target:  5'- uCGUGCGgGAcACGCGCGACa----- -3'
miRNA:   3'- cGCGCGCgUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 15707 0.75 0.793931
Target:  5'- cGCGCugcuGCGCGAGAUGCGCcaauugauaaAAgUGUUGGc -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCG----------UUgAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 15857 0.68 0.984361
Target:  5'- gGCGCaucucGCGCAGcAGCGCGCcAUcgucgagcaguUGUUGGu -3'
miRNA:   3'- -CGCG-----CGCGUU-UUGCGCGuUG-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 16170 0.66 0.997293
Target:  5'- uGCGCGuCGCGGAuaacaACGCcaaGCAAgUucuuUUGGg -3'
miRNA:   3'- -CGCGC-GCGUUU-----UGCG---CGUUgAu---AACC- -5'
21341 5' -49.2 NC_004778.3 + 16313 0.67 0.994792
Target:  5'- gGCGUcgGCGUGAuAACuGCGCAgucGCUGUUGa -3'
miRNA:   3'- -CGCG--CGCGUU-UUG-CGCGU---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 16682 0.77 0.723728
Target:  5'- aUGgGCGCuguGAGCGUGCuuuguGCUAUUGGa -3'
miRNA:   3'- cGCgCGCGu--UUUGCGCGu----UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 16951 0.66 0.997293
Target:  5'- cGCGCGCGCuguuCGauaugGCGACca-UGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCg----CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 17036 0.74 0.839431
Target:  5'- aGUGCagauGUGCAAAAUGCGCAACUcggcGGg -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCGUUGAuaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 17107 0.71 0.931301
Target:  5'- uGUGCGCGCG--GCGCGCcuACcg-UGGc -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu-UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 17345 0.66 0.99773
Target:  5'- -gGUGCGCGGGGCGC-UAGCUGa--- -3'
miRNA:   3'- cgCGCGCGUUUUGCGcGUUGAUaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.