miRNA display CGI


Results 1 - 20 of 223 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 317 0.76 0.774526
Target:  5'- aGCGCGUGCu-GGCGCaagaauuuguaGCAGCgGUUGGg -3'
miRNA:   3'- -CGCGCGCGuuUUGCG-----------CGUUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 1642 0.69 0.982364
Target:  5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3'
miRNA:   3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 2137 0.66 0.996209
Target:  5'- uGCGC-CGCA--GCGUGCAcgaGCUGUg-- -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGU---UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 2548 0.68 0.983976
Target:  5'- uGCGgGCgGCGAccuuuaguuguCGCGCAAUUGUUGa -3'
miRNA:   3'- -CGCgCG-CGUUuu---------GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 2595 0.66 0.996451
Target:  5'- gGCGUGcCGCAcucgggccacagguAACGCGCAAUaaagUGGu -3'
miRNA:   3'- -CGCGC-GCGUu-------------UUGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 2827 0.68 0.986182
Target:  5'- --aCGCGCAGGACGCGCcACa----- -3'
miRNA:   3'- cgcGCGCGUUUUGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 4607 0.66 0.996209
Target:  5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3'
miRNA:   3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 5101 0.71 0.931301
Target:  5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 6392 0.67 0.994792
Target:  5'- cCGCGCuGCAAAAgGCcgaauccaaGCAGCUGUUu- -3'
miRNA:   3'- cGCGCG-CGUUUUgCG---------CGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 6738 0.69 0.982364
Target:  5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5'
21341 5' -49.2 NC_004778.3 + 6946 0.72 0.901009
Target:  5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3'
miRNA:   3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 8116 0.66 0.998106
Target:  5'- aGCGaCGUGC---ACGUGCuACcAUUGGa -3'
miRNA:   3'- -CGC-GCGCGuuuUGCGCGuUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 8488 0.66 0.996209
Target:  5'- gGCGCGUuccGCAa---GCGCGGCg--UGGu -3'
miRNA:   3'- -CGCGCG---CGUuuugCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 8635 0.71 0.940092
Target:  5'- cGCGCuuGCGGAACGCGCcugaaccggccauuAGCUucUGGu -3'
miRNA:   3'- -CGCGcgCGUUUUGCGCG--------------UUGAuaACC- -5'
21341 5' -49.2 NC_004778.3 + 8815 0.72 0.913918
Target:  5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3'
miRNA:   3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 9407 0.69 0.977802
Target:  5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3'
miRNA:   3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 9519 0.71 0.950777
Target:  5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 9570 0.66 0.997606
Target:  5'- uGCGCGCcacgccaaacugcuGCAGuuuGCGCGCGuggugaaAUUGGu -3'
miRNA:   3'- -CGCGCG--------------CGUUu--UGCGCGUuga----UAACC- -5'
21341 5' -49.2 NC_004778.3 + 9674 0.66 0.996789
Target:  5'- -gGCGCGCAAAucgucgauacGCGCGCggUa----- -3'
miRNA:   3'- cgCGCGCGUUU----------UGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 10050 0.66 0.996209
Target:  5'- aGCGCGUGCGcAACaUGCAAaaGUUGa -3'
miRNA:   3'- -CGCGCGCGUuUUGcGCGUUgaUAACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.