miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 82415 0.73 0.864294
Target:  5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3'
miRNA:   3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 32909 0.75 0.802456
Target:  5'- gGCGCGUGCAcgcccgcAGACGCGaAACacugUGUUGGg -3'
miRNA:   3'- -CGCGCGCGU-------UUUGCGCgUUG----AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 61647 0.74 0.821796
Target:  5'- aGCGCGCGCcAAcgccGCGCGCAuGCUGg--- -3'
miRNA:   3'- -CGCGCGCGuUU----UGCGCGU-UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 88962 0.74 0.830714
Target:  5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5'
21341 5' -49.2 NC_004778.3 + 17036 0.74 0.839431
Target:  5'- aGUGCagauGUGCAAAAUGCGCAACUcggcGGg -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCGUUGAuaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 23750 0.74 0.839431
Target:  5'- aGCGCGUGCGccGAUGCuuGCAGCUAaagUGGc -3'
miRNA:   3'- -CGCGCGCGUu-UUGCG--CGUUGAUa--ACC- -5'
21341 5' -49.2 NC_004778.3 + 38357 0.74 0.839431
Target:  5'- cGCGCGCGCu-AGCGCGCAu------- -3'
miRNA:   3'- -CGCGCGCGuuUUGCGCGUugauaacc -5'
21341 5' -49.2 NC_004778.3 + 29339 0.74 0.847939
Target:  5'- gGCGCGCGCugggguGCGCcaaGCGGCUGUa-- -3'
miRNA:   3'- -CGCGCGCGuuu---UGCG---CGUUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 34179 0.73 0.864294
Target:  5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3'
miRNA:   3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 43986 0.75 0.793931
Target:  5'- gGCGCGcCGCccAACGCGCGGCcGgcGGg -3'
miRNA:   3'- -CGCGC-GCGuuUUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 15707 0.75 0.793931
Target:  5'- cGCGCugcuGCGCGAGAUGCGCcaauugauaaAAgUGUUGGc -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCG----------UUgAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 112390 0.75 0.784305
Target:  5'- -aGCGCGCGGu-CGCGCAGCUua-GGc -3'
miRNA:   3'- cgCGCGCGUUuuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 31250 0.79 0.593195
Target:  5'- gGCGCGCGCAccucgcgccGAgaaacuugcguucGCGCGCGACUGcuccgacUUGGa -3'
miRNA:   3'- -CGCGCGCGU---------UU-------------UGCGCGUUGAU-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 124564 0.78 0.626573
Target:  5'- aGCGCGCGCcGAgucacguaggcgcGCGCGCAACUuuuUUGc -3'
miRNA:   3'- -CGCGCGCGuUU-------------UGCGCGUUGAu--AACc -5'
21341 5' -49.2 NC_004778.3 + 60349 0.78 0.659995
Target:  5'- uGCGCGCGUAGAuuucGCGCGcCAGCUccagcgguUUGGu -3'
miRNA:   3'- -CGCGCGCGUUU----UGCGC-GUUGAu-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 25065 0.77 0.679309
Target:  5'- aUGUGCGC-AAACGCGCAGCUucuaucgcauauUUGGg -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAu-----------AACC- -5'
21341 5' -49.2 NC_004778.3 + 47989 0.77 0.70272
Target:  5'- aCGCGCGCAc-GCGCGCAACagacAUUGa -3'
miRNA:   3'- cGCGCGCGUuuUGCGCGUUGa---UAACc -5'
21341 5' -49.2 NC_004778.3 + 16682 0.77 0.723728
Target:  5'- aUGgGCGCuguGAGCGUGCuuuguGCUAUUGGa -3'
miRNA:   3'- cGCgCGCGu--UUUGCGCGu----UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 53731 0.77 0.723728
Target:  5'- uGCGCGCGCu--GCGCGCAaAUUAUa-- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 317 0.76 0.774526
Target:  5'- aGCGCGUGCu-GGCGCaagaauuuguaGCAGCgGUUGGg -3'
miRNA:   3'- -CGCGCGCGuuUUGCG-----------CGUUGaUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.