miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 106468 1.13 0.006727
Target:  5'- uGCGCGCGCAAAACGCGCAACUAUUGGc -3'
miRNA:   3'- -CGCGCGCGUUUUGCGCGUUGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 106606 0.83 0.377831
Target:  5'- uGCGCGCGCAGcGCGCuCAGCgcGUUGGa -3'
miRNA:   3'- -CGCGCGCGUUuUGCGcGUUGa-UAACC- -5'
21341 5' -49.2 NC_004778.3 + 45215 0.8 0.556943
Target:  5'- uCGCGCGCuGAugguagcgcucgucgGCGCGCAACUGUuUGGc -3'
miRNA:   3'- cGCGCGCGuUU---------------UGCGCGUUGAUA-ACC- -5'
21341 5' -49.2 NC_004778.3 + 31250 0.79 0.593195
Target:  5'- gGCGCGCGCAccucgcgccGAgaaacuugcguucGCGCGCGACUGcuccgacUUGGa -3'
miRNA:   3'- -CGCGCGCGU---------UU-------------UGCGCGUUGAU-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 124564 0.78 0.626573
Target:  5'- aGCGCGCGCcGAgucacguaggcgcGCGCGCAACUuuuUUGc -3'
miRNA:   3'- -CGCGCGCGuUU-------------UGCGCGUUGAu--AACc -5'
21341 5' -49.2 NC_004778.3 + 60349 0.78 0.659995
Target:  5'- uGCGCGCGUAGAuuucGCGCGcCAGCUccagcgguUUGGu -3'
miRNA:   3'- -CGCGCGCGUUU----UGCGC-GUUGAu-------AACC- -5'
21341 5' -49.2 NC_004778.3 + 25065 0.77 0.679309
Target:  5'- aUGUGCGC-AAACGCGCAGCUucuaucgcauauUUGGg -3'
miRNA:   3'- cGCGCGCGuUUUGCGCGUUGAu-----------AACC- -5'
21341 5' -49.2 NC_004778.3 + 10897 0.77 0.681448
Target:  5'- gGCGCGCacacggcagcccGCGGAGCGCGCAGCg----- -3'
miRNA:   3'- -CGCGCG------------CGUUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 47989 0.77 0.70272
Target:  5'- aCGCGCGCAc-GCGCGCAACagacAUUGa -3'
miRNA:   3'- cGCGCGCGUuuUGCGCGUUGa---UAACc -5'
21341 5' -49.2 NC_004778.3 + 53731 0.77 0.723728
Target:  5'- uGCGCGCGCu--GCGCGCAaAUUAUa-- -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 16682 0.77 0.723728
Target:  5'- aUGgGCGCuguGAGCGUGCuuuguGCUAUUGGa -3'
miRNA:   3'- cGCgCGCGu--UUUGCGCGu----UGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 89278 0.76 0.744386
Target:  5'- -gGCGCagGCGAAACGCGCGucuuuagcguGCUGUUGa -3'
miRNA:   3'- cgCGCG--CGUUUUGCGCGU----------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 77525 0.76 0.764607
Target:  5'- cGCGUGCGCAuugcaccAGCGCGCGGCg----- -3'
miRNA:   3'- -CGCGCGCGUu------UUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 41216 0.76 0.774526
Target:  5'- gGCacCGCGCuGGACGCGCGACUGcgagcggUGGa -3'
miRNA:   3'- -CGc-GCGCGuUUUGCGCGUUGAUa------ACC- -5'
21341 5' -49.2 NC_004778.3 + 317 0.76 0.774526
Target:  5'- aGCGCGUGCu-GGCGCaagaauuuguaGCAGCgGUUGGg -3'
miRNA:   3'- -CGCGCGCGuuUUGCG-----------CGUUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 112390 0.75 0.784305
Target:  5'- -aGCGCGCGGu-CGCGCAGCUua-GGc -3'
miRNA:   3'- cgCGCGCGUUuuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 43986 0.75 0.793931
Target:  5'- gGCGCGcCGCccAACGCGCGGCcGgcGGg -3'
miRNA:   3'- -CGCGC-GCGuuUUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 15707 0.75 0.793931
Target:  5'- cGCGCugcuGCGCGAGAUGCGCcaauugauaaAAgUGUUGGc -3'
miRNA:   3'- -CGCG----CGCGUUUUGCGCG----------UUgAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 32909 0.75 0.802456
Target:  5'- gGCGCGUGCAcgcccgcAGACGCGaAACacugUGUUGGg -3'
miRNA:   3'- -CGCGCGCGU-------UUUGCGCgUUG----AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 11560 0.75 0.803395
Target:  5'- gGCGCgGCGCAAAGCGUGCAuuuGCgccUUGc -3'
miRNA:   3'- -CGCG-CGCGUUUUGCGCGU---UGau-AACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.