Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21346 | 3' | -57.3 | NC_004778.3 | + | 41840 | 0.67 | 0.782788 |
Target: 5'- gCGUUGGAGaacugGCuCGCGGCGCaaccCGUCg -3' miRNA: 3'- -GCAACCUUaga--CG-GUGCCGCGc---GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 121606 | 0.68 | 0.71568 |
Target: 5'- ---cGGGuUCUGCUGCaGCGCGCGguCCa -3' miRNA: 3'- gcaaCCUuAGACGGUGcCGCGCGC--GG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 61973 | 0.68 | 0.725552 |
Target: 5'- uGUcgGGGcgCuUGCCGCuGCGCGUgGCCa -3' miRNA: 3'- gCAa-CCUuaG-ACGGUGcCGCGCG-CGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 118854 | 0.68 | 0.735344 |
Target: 5'- ---cGGAA-CaGaCACGGCGCGCGCa -3' miRNA: 3'- gcaaCCUUaGaCgGUGCCGCGCGCGg -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 35782 | 0.68 | 0.745047 |
Target: 5'- gGUUGGcGGUCUGCgaAUGGUGUGUGUUu -3' miRNA: 3'- gCAACC-UUAGACGg-UGCCGCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 31228 | 0.68 | 0.745047 |
Target: 5'- aGUUaGAGgcguugCUGuCCGUGGCGCGCGCa -3' miRNA: 3'- gCAAcCUUa-----GAC-GGUGCCGCGCGCGg -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 95755 | 0.68 | 0.753696 |
Target: 5'- -uUUGGAGcCgcGCCgggcgcuauccgcGCGGCaGCGCGCCg -3' miRNA: 3'- gcAACCUUaGa-CGG-------------UGCCG-CGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 45458 | 0.67 | 0.76415 |
Target: 5'- aGgcGGAAcucgCUGCCGCGGUcgggcaacucGCGCGgaCCg -3' miRNA: 3'- gCaaCCUUa---GACGGUGCCG----------CGCGC--GG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 26061 | 0.67 | 0.782788 |
Target: 5'- uCGUUGccaccgccGUCgugGCCACGGCGCuguacauaaucGCGCUu -3' miRNA: 3'- -GCAACcu------UAGa--CGGUGCCGCG-----------CGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 10721 | 0.68 | 0.714689 |
Target: 5'- gGUUGGAccgCUGuucgcugcgcgcuCCGCGGgcugccgugUGCGCGCCg -3' miRNA: 3'- gCAACCUua-GAC-------------GGUGCC---------GCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 97366 | 0.68 | 0.709723 |
Target: 5'- uGUUGGGcaucgcguAUUUGCUgaccgccaucgugugGCGGCGCGCaaggaaGCCg -3' miRNA: 3'- gCAACCU--------UAGACGG---------------UGCCGCGCG------CGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 35998 | 0.69 | 0.695733 |
Target: 5'- uCGUUGGGAUg-GCaccgCACGGCGgGCaacGCCa -3' miRNA: 3'- -GCAACCUUAgaCG----GUGCCGCgCG---CGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 121248 | 0.72 | 0.485681 |
Target: 5'- aGUcGGggUCUGCgGCGGgGuCGCucuGCCg -3' miRNA: 3'- gCAaCCuuAGACGgUGCCgC-GCG---CGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 46401 | 0.72 | 0.504804 |
Target: 5'- -------cUCUGCCACucuuuGGCGCGUGCCg -3' miRNA: 3'- gcaaccuuAGACGGUG-----CCGCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 53668 | 0.71 | 0.553916 |
Target: 5'- uCGUUGaGGcgCUGCCcaauGCGGCGCaaaacaaCGCCg -3' miRNA: 3'- -GCAAC-CUuaGACGG----UGCCGCGc------GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 63504 | 0.71 | 0.573972 |
Target: 5'- ---cGGGcUCaUGCUGCGGCG-GCGCCa -3' miRNA: 3'- gcaaCCUuAG-ACGGUGCCGCgCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 31743 | 0.7 | 0.594191 |
Target: 5'- --aUGGAGUUUaa-GCGGCGCGuCGCCa -3' miRNA: 3'- gcaACCUUAGAcggUGCCGCGC-GCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 7143 | 0.7 | 0.61452 |
Target: 5'- ---aGGAAUCcGUCuCGGCgggcgGCGCGCCg -3' miRNA: 3'- gcaaCCUUAGaCGGuGCCG-----CGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 29327 | 0.7 | 0.61452 |
Target: 5'- ----cGAAggUGgCGCGGCGCGCGCUg -3' miRNA: 3'- gcaacCUUagACgGUGCCGCGCGCGG- -5' |
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21346 | 3' | -57.3 | NC_004778.3 | + | 90457 | 0.69 | 0.665438 |
Target: 5'- --cUGGc--UUGCUACGGCGC-CGCCg -3' miRNA: 3'- gcaACCuuaGACGGUGCCGCGcGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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