miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 111793 0.95 0.018974
Target:  5'- gCGUUGGAAUCUGCCACgGGC-CGCGCCg -3'
miRNA:   3'- -GCAACCUUAGACGGUG-CCGcGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 4734 0.79 0.217449
Target:  5'- cCGUUGGAcaguggccaGUCUGCUaacGCGGCacaGCGCGCUg -3'
miRNA:   3'- -GCAACCU---------UAGACGG---UGCCG---CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 32305 0.78 0.228308
Target:  5'- -uUUGGAAgugGCCGCGGCGCauuggaGCGCCg -3'
miRNA:   3'- gcAACCUUagaCGGUGCCGCG------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 17268 0.74 0.395881
Target:  5'- ---cGGcg-UUGCCACGGUagGCGCGCCg -3'
miRNA:   3'- gcaaCCuuaGACGGUGCCG--CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 121248 0.72 0.485681
Target:  5'- aGUcGGggUCUGCgGCGGgGuCGCucuGCCg -3'
miRNA:   3'- gCAaCCuuAGACGgUGCCgC-GCG---CGG- -5'
21346 3' -57.3 NC_004778.3 + 46401 0.72 0.504804
Target:  5'- -------cUCUGCCACucuuuGGCGCGUGCCg -3'
miRNA:   3'- gcaaccuuAGACGGUG-----CCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 55449 0.71 0.543964
Target:  5'- ---cGGuccuUCUucgGCCGCuGCGCGCGCCa -3'
miRNA:   3'- gcaaCCuu--AGA---CGGUGcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 53668 0.71 0.553916
Target:  5'- uCGUUGaGGcgCUGCCcaauGCGGCGCaaaacaaCGCCg -3'
miRNA:   3'- -GCAAC-CUuaGACGG----UGCCGCGc------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 63504 0.71 0.573972
Target:  5'- ---cGGGcUCaUGCUGCGGCG-GCGCCa -3'
miRNA:   3'- gcaaCCUuAG-ACGGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31743 0.7 0.594191
Target:  5'- --aUGGAGUUUaa-GCGGCGCGuCGCCa -3'
miRNA:   3'- gcaACCUUAGAcggUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 29327 0.7 0.61452
Target:  5'- ----cGAAggUGgCGCGGCGCGCGCUg -3'
miRNA:   3'- gcaacCUUagACgGUGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 7143 0.7 0.61452
Target:  5'- ---aGGAAUCcGUCuCGGCgggcgGCGCGCCg -3'
miRNA:   3'- gcaaCCUUAGaCGGuGCCG-----CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 67230 0.7 0.61452
Target:  5'- -uUUGGAGUCgcuccauCCGauGCGCGUGCCg -3'
miRNA:   3'- gcAACCUUAGac-----GGUgcCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 8910 0.7 0.631844
Target:  5'- uGUUGGggUaguggacgggguggCgcGCCACGGCGCcggcgGCGUCa -3'
miRNA:   3'- gCAACCuuA--------------Ga-CGGUGCCGCG-----CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 95178 0.69 0.644075
Target:  5'- ---cGGggUgguccaggcgcacCUGCCcgucggcgcACGGCGCGCGCg -3'
miRNA:   3'- gcaaCCuuA-------------GACGG---------UGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 115093 0.69 0.645094
Target:  5'- --aUGGcaaagGCCGCGGUGCGCacGCCg -3'
miRNA:   3'- gcaACCuuagaCGGUGCCGCGCG--CGG- -5'
21346 3' -57.3 NC_004778.3 + 87713 0.69 0.645094
Target:  5'- uCGUUGuAAUgCUGUagCAUGGCGCGCGgCg -3'
miRNA:   3'- -GCAACcUUA-GACG--GUGCCGCGCGCgG- -5'
21346 3' -57.3 NC_004778.3 + 47566 0.69 0.645094
Target:  5'- uGUUGGggUggcgCgugGuCCACGcGCGCGCGUg -3'
miRNA:   3'- gCAACCuuA----Ga--C-GGUGC-CGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 90457 0.69 0.665438
Target:  5'- --cUGGc--UUGCUACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuaGACGGUGCCGCGcGCGG- -5'
21346 3' -57.3 NC_004778.3 + 83270 0.69 0.675575
Target:  5'- aCGUUGGGuaaccaGUCgaUCGCGGCGCGCaaGCUg -3'
miRNA:   3'- -GCAACCU------UAGacGGUGCCGCGCG--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.