miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21346 3' -57.3 NC_004778.3 + 41840 0.67 0.782788
Target:  5'- gCGUUGGAGaacugGCuCGCGGCGCaaccCGUCg -3'
miRNA:   3'- -GCAACCUUaga--CG-GUGCCGCGc---GCGG- -5'
21346 3' -57.3 NC_004778.3 + 121606 0.68 0.71568
Target:  5'- ---cGGGuUCUGCUGCaGCGCGCGguCCa -3'
miRNA:   3'- gcaaCCUuAGACGGUGcCGCGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 61973 0.68 0.725552
Target:  5'- uGUcgGGGcgCuUGCCGCuGCGCGUgGCCa -3'
miRNA:   3'- gCAa-CCUuaG-ACGGUGcCGCGCG-CGG- -5'
21346 3' -57.3 NC_004778.3 + 118854 0.68 0.735344
Target:  5'- ---cGGAA-CaGaCACGGCGCGCGCa -3'
miRNA:   3'- gcaaCCUUaGaCgGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 35782 0.68 0.745047
Target:  5'- gGUUGGcGGUCUGCgaAUGGUGUGUGUUu -3'
miRNA:   3'- gCAACC-UUAGACGg-UGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31228 0.68 0.745047
Target:  5'- aGUUaGAGgcguugCUGuCCGUGGCGCGCGCa -3'
miRNA:   3'- gCAAcCUUa-----GAC-GGUGCCGCGCGCGg -5'
21346 3' -57.3 NC_004778.3 + 95755 0.68 0.753696
Target:  5'- -uUUGGAGcCgcGCCgggcgcuauccgcGCGGCaGCGCGCCg -3'
miRNA:   3'- gcAACCUUaGa-CGG-------------UGCCG-CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 45458 0.67 0.76415
Target:  5'- aGgcGGAAcucgCUGCCGCGGUcgggcaacucGCGCGgaCCg -3'
miRNA:   3'- gCaaCCUUa---GACGGUGCCG----------CGCGC--GG- -5'
21346 3' -57.3 NC_004778.3 + 26061 0.67 0.782788
Target:  5'- uCGUUGccaccgccGUCgugGCCACGGCGCuguacauaaucGCGCUu -3'
miRNA:   3'- -GCAACcu------UAGa--CGGUGCCGCG-----------CGCGG- -5'
21346 3' -57.3 NC_004778.3 + 10721 0.68 0.714689
Target:  5'- gGUUGGAccgCUGuucgcugcgcgcuCCGCGGgcugccgugUGCGCGCCg -3'
miRNA:   3'- gCAACCUua-GAC-------------GGUGCC---------GCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 97366 0.68 0.709723
Target:  5'- uGUUGGGcaucgcguAUUUGCUgaccgccaucgugugGCGGCGCGCaaggaaGCCg -3'
miRNA:   3'- gCAACCU--------UAGACGG---------------UGCCGCGCG------CGG- -5'
21346 3' -57.3 NC_004778.3 + 35998 0.69 0.695733
Target:  5'- uCGUUGGGAUg-GCaccgCACGGCGgGCaacGCCa -3'
miRNA:   3'- -GCAACCUUAgaCG----GUGCCGCgCG---CGG- -5'
21346 3' -57.3 NC_004778.3 + 121248 0.72 0.485681
Target:  5'- aGUcGGggUCUGCgGCGGgGuCGCucuGCCg -3'
miRNA:   3'- gCAaCCuuAGACGgUGCCgC-GCG---CGG- -5'
21346 3' -57.3 NC_004778.3 + 46401 0.72 0.504804
Target:  5'- -------cUCUGCCACucuuuGGCGCGUGCCg -3'
miRNA:   3'- gcaaccuuAGACGGUG-----CCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 53668 0.71 0.553916
Target:  5'- uCGUUGaGGcgCUGCCcaauGCGGCGCaaaacaaCGCCg -3'
miRNA:   3'- -GCAAC-CUuaGACGG----UGCCGCGc------GCGG- -5'
21346 3' -57.3 NC_004778.3 + 63504 0.71 0.573972
Target:  5'- ---cGGGcUCaUGCUGCGGCG-GCGCCa -3'
miRNA:   3'- gcaaCCUuAG-ACGGUGCCGCgCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 31743 0.7 0.594191
Target:  5'- --aUGGAGUUUaa-GCGGCGCGuCGCCa -3'
miRNA:   3'- gcaACCUUAGAcggUGCCGCGC-GCGG- -5'
21346 3' -57.3 NC_004778.3 + 7143 0.7 0.61452
Target:  5'- ---aGGAAUCcGUCuCGGCgggcgGCGCGCCg -3'
miRNA:   3'- gcaaCCUUAGaCGGuGCCG-----CGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 29327 0.7 0.61452
Target:  5'- ----cGAAggUGgCGCGGCGCGCGCUg -3'
miRNA:   3'- gcaacCUUagACgGUGCCGCGCGCGG- -5'
21346 3' -57.3 NC_004778.3 + 90457 0.69 0.665438
Target:  5'- --cUGGc--UUGCUACGGCGC-CGCCg -3'
miRNA:   3'- gcaACCuuaGACGGUGCCGCGcGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.