miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21347 3' -54.5 NC_004778.3 + 121793 0.66 0.940714
Target:  5'- uUCCCcgaaACCAACGu-GCGcuCGGCCGa -3'
miRNA:   3'- gAGGG----UGGUUGCuuUGCucGUCGGCg -5'
21347 3' -54.5 NC_004778.3 + 93271 0.66 0.940714
Target:  5'- --aUCGCCAGCGcgGCGAGCaauuuAGCUuGCg -3'
miRNA:   3'- gagGGUGGUUGCuuUGCUCG-----UCGG-CG- -5'
21347 3' -54.5 NC_004778.3 + 68614 0.66 0.940714
Target:  5'- ---aCGCCGGCGGcGGCG-GCGGCgGCg -3'
miRNA:   3'- gaggGUGGUUGCU-UUGCuCGUCGgCG- -5'
21347 3' -54.5 NC_004778.3 + 89152 0.66 0.940714
Target:  5'- uCUCCgugaucggCACUAGCGGguuccaguacacAACG-GUGGCCGCg -3'
miRNA:   3'- -GAGG--------GUGGUUGCU------------UUGCuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 34291 0.66 0.940714
Target:  5'- -gCCCGCCuACGA---GAGCAGCaagugccggCGCg -3'
miRNA:   3'- gaGGGUGGuUGCUuugCUCGUCG---------GCG- -5'
21347 3' -54.5 NC_004778.3 + 32443 0.66 0.940714
Target:  5'- -cUgCAUCAGCau-GCGGcGCAGCCGCu -3'
miRNA:   3'- gaGgGUGGUUGcuuUGCU-CGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 31091 0.66 0.940239
Target:  5'- uUCCUugCcguacuuGACGccauCGAuGCGGCCGCa -3'
miRNA:   3'- gAGGGugG-------UUGCuuu-GCU-CGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 42636 0.66 0.93585
Target:  5'- uUCCCGCCGccgACGGugcACGAGUgcaAGaCGCu -3'
miRNA:   3'- gAGGGUGGU---UGCUu--UGCUCG---UCgGCG- -5'
21347 3' -54.5 NC_004778.3 + 60053 0.66 0.93535
Target:  5'- -gCCCGCCGAgGAaccggcgGACGAGUcGCgGUu -3'
miRNA:   3'- gaGGGUGGUUgCU-------UUGCUCGuCGgCG- -5'
21347 3' -54.5 NC_004778.3 + 96635 0.66 0.930739
Target:  5'- --gCCGCCgAGCGAAAauUGcAGCAauGCCGCg -3'
miRNA:   3'- gagGGUGG-UUGCUUU--GC-UCGU--CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 114068 0.66 0.930739
Target:  5'- gCUCuCCGCgAGCGAGgaacccGCG-GC-GCCGCc -3'
miRNA:   3'- -GAG-GGUGgUUGCUU------UGCuCGuCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 45055 0.66 0.927555
Target:  5'- -gCgCGCCGACGAGcgcuaccaucagcgcGCGAGCGGCg-- -3'
miRNA:   3'- gaGgGUGGUUGCUU---------------UGCUCGUCGgcg -5'
21347 3' -54.5 NC_004778.3 + 45585 0.66 0.925382
Target:  5'- gCUCCU-CCAGCGccuGGCGcGCcuucugcauAGCCGCg -3'
miRNA:   3'- -GAGGGuGGUUGCu--UUGCuCG---------UCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 2216 0.66 0.925382
Target:  5'- -aCCCGCCccacAAUGAGGaacGCGGCUGCg -3'
miRNA:   3'- gaGGGUGG----UUGCUUUgcuCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 8104 0.66 0.925382
Target:  5'- gUgCUACCAuUGGAcgaGGGCGGCCGUg -3'
miRNA:   3'- gAgGGUGGUuGCUUug-CUCGUCGGCG- -5'
21347 3' -54.5 NC_004778.3 + 34585 0.66 0.919777
Target:  5'- -gCCCGuguaCAGCaguACGGGCAcGCCGCg -3'
miRNA:   3'- gaGGGUg---GUUGcuuUGCUCGU-CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 74980 0.66 0.913925
Target:  5'- -gCCCACCGACu--ACGGGCgcaaGGCgGUg -3'
miRNA:   3'- gaGGGUGGUUGcuuUGCUCG----UCGgCG- -5'
21347 3' -54.5 NC_004778.3 + 95166 0.66 0.913925
Target:  5'- --aCCGCCGACGGcgucGAagUGAGCGGuuGUa -3'
miRNA:   3'- gagGGUGGUUGCU----UU--GCUCGUCggCG- -5'
21347 3' -54.5 NC_004778.3 + 83520 0.66 0.913925
Target:  5'- gCUCCaguuCGCCGGCGGAACauGGCucGUCGCg -3'
miRNA:   3'- -GAGG----GUGGUUGCUUUGc-UCGu-CGGCG- -5'
21347 3' -54.5 NC_004778.3 + 37262 0.66 0.913925
Target:  5'- -gUCgGCCAACGAgGACGugcuGguGCCGUu -3'
miRNA:   3'- gaGGgUGGUUGCU-UUGCu---CguCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.