miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21347 5' -56.3 NC_004778.3 + 17186 0.66 0.888019
Target:  5'- cCGCGacugcacggacGCCAAAaucuaCGagaCGGCGGUGCGCg -3'
miRNA:   3'- aGCGC-----------CGGUUUc----GCa--GCCGUCAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 17279 0.66 0.888019
Target:  5'- gUCGCuGGCaacGGCGUugccaCGGUAG-GCGCg -3'
miRNA:   3'- -AGCG-CCGguuUCGCA-----GCCGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 4725 0.66 0.888019
Target:  5'- -aGUGGCCAGucuGCuaacgCGGCAcaGCGCg -3'
miRNA:   3'- agCGCCGGUUu--CGca---GCCGUcaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 20220 0.66 0.888019
Target:  5'- cUGUGGCCuccuuguGCGccugcCGGCAGUugGa -3'
miRNA:   3'- aGCGCCGGuuu----CGCa----GCCGUCAugCg -5'
21347 5' -56.3 NC_004778.3 + 61018 0.66 0.888019
Target:  5'- uUCGUccGGCguGcAGCGUUGGCGGU-CGg -3'
miRNA:   3'- -AGCG--CCGguU-UCGCAGCCGUCAuGCg -5'
21347 5' -56.3 NC_004778.3 + 19425 0.66 0.888019
Target:  5'- cCGCGGUCAgcGCGacaUCGGCGuggacacuUACGUg -3'
miRNA:   3'- aGCGCCGGUuuCGC---AGCCGUc-------AUGCG- -5'
21347 5' -56.3 NC_004778.3 + 29096 0.66 0.883868
Target:  5'- uUUG-GGCUAGAcagcaaaugcccgacGUGUCGGCAGgACGUg -3'
miRNA:   3'- -AGCgCCGGUUU---------------CGCAGCCGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 59037 0.66 0.881055
Target:  5'- -gGCGGCUAAccGC-UCGGC-GUugGCc -3'
miRNA:   3'- agCGCCGGUUu-CGcAGCCGuCAugCG- -5'
21347 5' -56.3 NC_004778.3 + 58259 0.66 0.881055
Target:  5'- cUCGUggGGCuCGAGGCG-CGGCGGcgGCa- -3'
miRNA:   3'- -AGCG--CCG-GUUUCGCaGCCGUCa-UGcg -5'
21347 5' -56.3 NC_004778.3 + 127077 0.66 0.881055
Target:  5'- gCGUGGCCGAAGUGcUCGacuugucCAGcAUGCg -3'
miRNA:   3'- aGCGCCGGUUUCGC-AGCc------GUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 70164 0.66 0.879635
Target:  5'- aUGCGcGCCAGaauGGCGUCGcugcccaguuGCAGguuuugcggcggGCGCg -3'
miRNA:   3'- aGCGC-CGGUU---UCGCAGC----------CGUCa-----------UGCG- -5'
21347 5' -56.3 NC_004778.3 + 45752 0.66 0.876768
Target:  5'- gCGCGGCUAugcagaAGGCGcgccaGGCGcuggaggagcgcuacGUGCGCg -3'
miRNA:   3'- aGCGCCGGU------UUCGCag---CCGU---------------CAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 95355 0.66 0.873867
Target:  5'- gCGCGGCCcgaccacaacGAGC--UGGCGG-ACGCg -3'
miRNA:   3'- aGCGCCGGu---------UUCGcaGCCGUCaUGCG- -5'
21347 5' -56.3 NC_004778.3 + 85765 0.66 0.873867
Target:  5'- gUCGUucuuGGCgAAuauGGCGUCaGCGGU-CGCa -3'
miRNA:   3'- -AGCG----CCGgUU---UCGCAGcCGUCAuGCG- -5'
21347 5' -56.3 NC_004778.3 + 38550 0.66 0.873867
Target:  5'- gUCGCaGUCGAacguGGCGUaCGaCAGUAUGCc -3'
miRNA:   3'- -AGCGcCGGUU----UCGCA-GCcGUCAUGCG- -5'
21347 5' -56.3 NC_004778.3 + 94841 0.66 0.873867
Target:  5'- cUCGCGGUUc-AGCG-CGaaGCAGUACGa -3'
miRNA:   3'- -AGCGCCGGuuUCGCaGC--CGUCAUGCg -5'
21347 5' -56.3 NC_004778.3 + 4267 0.66 0.869449
Target:  5'- cCGCGcGCCucuucgaagcgaauaAuuGCGUCGGcCGGUgacACGCc -3'
miRNA:   3'- aGCGC-CGG---------------UuuCGCAGCC-GUCA---UGCG- -5'
21347 5' -56.3 NC_004778.3 + 50746 0.66 0.866461
Target:  5'- gCGCGGCCGuggaaacccGCGUaaaCGGCuuGUuCGCa -3'
miRNA:   3'- aGCGCCGGUuu-------CGCA---GCCGu-CAuGCG- -5'
21347 5' -56.3 NC_004778.3 + 43096 0.66 0.866461
Target:  5'- gCGCGGCCuuacuacCGgCGGCuGcUGCGCa -3'
miRNA:   3'- aGCGCCGGuuuc---GCaGCCGuC-AUGCG- -5'
21347 5' -56.3 NC_004778.3 + 2444 0.66 0.866461
Target:  5'- cUGUGGCCcGAGUG-CGGCAcgcCGCu -3'
miRNA:   3'- aGCGCCGGuUUCGCaGCCGUcauGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.