miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21348 5' -57.7 NC_004778.3 + 39111 0.66 0.817783
Target:  5'- gCAAGUaCGUGGU-GCGCGGC---GGCg -3'
miRNA:   3'- -GUUCGcGCGCCAgCGCGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 21243 0.66 0.80903
Target:  5'- aAAGcCGUGCaGUcCGCGCGGC--AGGUu -3'
miRNA:   3'- gUUC-GCGCGcCA-GCGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 8485 0.66 0.80903
Target:  5'- uCAGGCGCGUuccgcaaGCGCGGCgu-GGUa -3'
miRNA:   3'- -GUUCGCGCGccag---CGCGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 69951 0.66 0.80903
Target:  5'- --cGCGacaCGCGGUCGCGaGGCac-GGCc -3'
miRNA:   3'- guuCGC---GCGCCAGCGCgUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 63492 0.66 0.800115
Target:  5'- --cGCGgGCGGauUCGgGCucauGCUgcGGCg -3'
miRNA:   3'- guuCGCgCGCC--AGCgCGu---CGAauCCG- -5'
21348 5' -57.7 NC_004778.3 + 47760 0.66 0.800115
Target:  5'- --uGUGCGCgGGUCGCcguaCAGU--AGGCa -3'
miRNA:   3'- guuCGCGCG-CCAGCGc---GUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 124970 0.66 0.800115
Target:  5'- cCAAaaGCGgGGUCGgGCGGCgauucuGGUg -3'
miRNA:   3'- -GUUcgCGCgCCAGCgCGUCGaau---CCG- -5'
21348 5' -57.7 NC_004778.3 + 43985 0.66 0.800115
Target:  5'- -uGGCGCGCcgcccaaCGCGCGGCc--GGCg -3'
miRNA:   3'- guUCGCGCGcca----GCGCGUCGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 7860 0.66 0.79741
Target:  5'- -cAGCauaaGCGCGGUgGCGCccacguuuaccuuuAGCaUUAGGUc -3'
miRNA:   3'- guUCG----CGCGCCAgCGCG--------------UCG-AAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 48861 0.66 0.791046
Target:  5'- --uGCGCaGuUGGUCGCGCAcgGCcuuGGCg -3'
miRNA:   3'- guuCGCG-C-GCCAGCGCGU--CGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 95923 0.66 0.791046
Target:  5'- -cGGCGCGCuGcCGCGCggauAGCgcccGGCg -3'
miRNA:   3'- guUCGCGCGcCaGCGCG----UCGaau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 80495 0.66 0.781834
Target:  5'- -cAGCaCGCagcccaaGUCGCGCAGCUcgcucAGGCu -3'
miRNA:   3'- guUCGcGCGc------CAGCGCGUCGAa----UCCG- -5'
21348 5' -57.7 NC_004778.3 + 10884 0.66 0.781834
Target:  5'- -cAGCcCGCGGagCGCGCAGCgaacaGCg -3'
miRNA:   3'- guUCGcGCGCCa-GCGCGUCGaauc-CG- -5'
21348 5' -57.7 NC_004778.3 + 5606 0.66 0.781834
Target:  5'- gCAGGCGCGCaGUUGC-CuuuGUUUugGGGCu -3'
miRNA:   3'- -GUUCGCGCGcCAGCGcGu--CGAA--UCCG- -5'
21348 5' -57.7 NC_004778.3 + 47558 0.66 0.781834
Target:  5'- -uGGCGCGUGGUccaCGCGCGcGCgu--GCg -3'
miRNA:   3'- guUCGCGCGCCA---GCGCGU-CGaaucCG- -5'
21348 5' -57.7 NC_004778.3 + 128775 0.66 0.772485
Target:  5'- -cGGCG-GCGGagGCGgaGGCggAGGCg -3'
miRNA:   3'- guUCGCgCGCCagCGCg-UCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 50221 0.66 0.772485
Target:  5'- --cGCGCGaCGGUcaccaCGCGCcGUUUcguaGGGCg -3'
miRNA:   3'- guuCGCGC-GCCA-----GCGCGuCGAA----UCCG- -5'
21348 5' -57.7 NC_004778.3 + 105147 0.66 0.772485
Target:  5'- uGGGCGcCGCGG-CGCGCuuGUU--GGCu -3'
miRNA:   3'- gUUCGC-GCGCCaGCGCGu-CGAauCCG- -5'
21348 5' -57.7 NC_004778.3 + 128694 0.66 0.772485
Target:  5'- -cGGCG-GCGGagGCGgaGGCggAGGCg -3'
miRNA:   3'- guUCGCgCGCCagCGCg-UCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 53162 0.66 0.771543
Target:  5'- -uGGCG-GCGGUUGCuguggcgGCGGUUgcGGCg -3'
miRNA:   3'- guUCGCgCGCCAGCG-------CGUCGAauCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.