miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21348 5' -57.7 NC_004778.3 + 112387 1.11 0.001034
Target:  5'- gCAAGCGCGCGGUCGCGCAGCUUAGGCg -3'
miRNA:   3'- -GUUCGCGCGCCAGCGCGUCGAAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 38453 0.83 0.098865
Target:  5'- -cGGCGCGCGGUCGCGUGcGCgcuGGCg -3'
miRNA:   3'- guUCGCGCGCCAGCGCGU-CGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 15602 0.72 0.463437
Target:  5'- ----gGCGUGGUCGCGCGG---AGGCg -3'
miRNA:   3'- guucgCGCGCCAGCGCGUCgaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 107908 0.72 0.43589
Target:  5'- aCGAGCGCgacgcggugcuGCGGUCcaaGCGCAGC--AGGUu -3'
miRNA:   3'- -GUUCGCG-----------CGCCAG---CGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 9903 0.72 0.472821
Target:  5'- gCAAGUGCGCaaUCGCGgAGCg-GGGCa -3'
miRNA:   3'- -GUUCGCGCGccAGCGCgUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 61800 0.72 0.472821
Target:  5'- gCAuGCGCGCGGcguuggcgCGCGCuGGCUgcgcGGCg -3'
miRNA:   3'- -GUuCGCGCGCCa-------GCGCG-UCGAau--CCG- -5'
21348 5' -57.7 NC_004778.3 + 111597 0.72 0.454152
Target:  5'- -cGGCGCGCGGUguuaCGCGCGccgaguacGCaaUGGGCg -3'
miRNA:   3'- guUCGCGCGCCA----GCGCGU--------CGa-AUCCG- -5'
21348 5' -57.7 NC_004778.3 + 127065 0.72 0.444968
Target:  5'- uCGAGCGUGCcGUCGUGCAcGCcc-GGCg -3'
miRNA:   3'- -GUUCGCGCGcCAGCGCGU-CGaauCCG- -5'
21348 5' -57.7 NC_004778.3 + 70276 0.71 0.511263
Target:  5'- --cGUGCGCGG-C-CGCGGCauauUUAGGCg -3'
miRNA:   3'- guuCGCGCGCCaGcGCGUCG----AAUCCG- -5'
21348 5' -57.7 NC_004778.3 + 48666 0.71 0.511263
Target:  5'- --cGCGauuGUGGUCGCGguGCUgcuGGUg -3'
miRNA:   3'- guuCGCg--CGCCAGCGCguCGAau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 112214 0.71 0.530968
Target:  5'- --cGCGCauaGCGGcCGCGCGGUccAGGUg -3'
miRNA:   3'- guuCGCG---CGCCaGCGCGUCGaaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 62219 0.7 0.540924
Target:  5'- --cGCGCGCGaGUCGUGgGGCUcaAGGa -3'
miRNA:   3'- guuCGCGCGC-CAGCGCgUCGAa-UCCg -5'
21348 5' -57.7 NC_004778.3 + 61646 0.7 0.571139
Target:  5'- -cAGCGCGCGccaacgccgCGCGCAuGCU-GGGCc -3'
miRNA:   3'- guUCGCGCGCca-------GCGCGU-CGAaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 29329 0.7 0.540924
Target:  5'- aAGGUgGCGCGG-CGCGC-GCUgGGGUg -3'
miRNA:   3'- gUUCG-CGCGCCaGCGCGuCGAaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 110106 0.69 0.601744
Target:  5'- uGGGCGCGCcgacgugcaaauGGUUGCGCAcCUcgucGGGCa -3'
miRNA:   3'- gUUCGCGCG------------CCAGCGCGUcGAa---UCCG- -5'
21348 5' -57.7 NC_004778.3 + 33378 0.69 0.601744
Target:  5'- -cAGUGCuGCGGUUGUGCGGaCUUGcgcccGGCc -3'
miRNA:   3'- guUCGCG-CGCCAGCGCGUC-GAAU-----CCG- -5'
21348 5' -57.7 NC_004778.3 + 57627 0.69 0.632552
Target:  5'- --cGuCGCGCGGcagCG-GCAGCUUgcccAGGCa -3'
miRNA:   3'- guuC-GCGCGCCa--GCgCGUCGAA----UCCG- -5'
21348 5' -57.7 NC_004778.3 + 56651 0.69 0.632552
Target:  5'- cCAAGCuaGCG--CGCGguGCUcAGGCg -3'
miRNA:   3'- -GUUCGcgCGCcaGCGCguCGAaUCCG- -5'
21348 5' -57.7 NC_004778.3 + 124083 0.69 0.601744
Target:  5'- -cGGCGCGCuGaugCGCGCGGUUggcGGCc -3'
miRNA:   3'- guUCGCGCGcCa--GCGCGUCGAau-CCG- -5'
21348 5' -57.7 NC_004778.3 + 25649 0.69 0.622272
Target:  5'- gCAAGCuuGCGCGGggGCcgGCGGCgugUGGGUc -3'
miRNA:   3'- -GUUCG--CGCGCCagCG--CGUCGa--AUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.