miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21351 3' -55.9 NC_004778.3 + 29070 0.68 0.764096
Target:  5'- --cGGAgGUGCGaauuguUCgGGCGCCG-CCUCg -3'
miRNA:   3'- auaUCUgCACGC------AG-UCGCGGCuGGAG- -5'
21351 3' -55.9 NC_004778.3 + 31233 0.66 0.876181
Target:  5'- --gAGGCGuUGCuGUCcguGGCGCgCGcACCUCg -3'
miRNA:   3'- auaUCUGC-ACG-CAG---UCGCG-GC-UGGAG- -5'
21351 3' -55.9 NC_004778.3 + 39108 0.71 0.610745
Target:  5'- aGUAcGugGUGCG-CGGCGgCGACCa- -3'
miRNA:   3'- aUAU-CugCACGCaGUCGCgGCUGGag -5'
21351 3' -55.9 NC_004778.3 + 47130 0.67 0.836761
Target:  5'- --aAGcGCGUcgGCGUgAGCGCCGGCgCUUu -3'
miRNA:   3'- auaUC-UGCA--CGCAgUCGCGGCUG-GAG- -5'
21351 3' -55.9 NC_004778.3 + 49092 0.74 0.42317
Target:  5'- cGUGGGCGaggGCuUCuacaauuGCGCCGACCUCg -3'
miRNA:   3'- aUAUCUGCa--CGcAGu------CGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66423 0.83 0.131393
Target:  5'- -------aUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auaucugcACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66483 0.9 0.040712
Target:  5'- -uUAGACGUGCGUCGGCGCCGAUC-Cg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGaG- -5'
21351 3' -55.9 NC_004778.3 + 66548 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66614 1.05 0.003932
Target:  5'- -uUAGACGUGCGUCAGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66680 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66746 1.03 0.00522
Target:  5'- -uUGGACGUGCGUCGGCGCCGACCUCa -3'
miRNA:   3'- auAUCUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66812 0.93 0.028329
Target:  5'- ----uACGUGCGUCGGCGCCGACCUCg -3'
miRNA:   3'- auaucUGCACGCAGUCGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 66850 0.66 0.861051
Target:  5'- --cAGACGUucucgaaaaGCGaggUCGGCGCCGACg-- -3'
miRNA:   3'- auaUCUGCA---------CGC---AGUCGCGGCUGgag -5'
21351 3' -55.9 NC_004778.3 + 66900 0.78 0.267924
Target:  5'- --gAGuACG-GCGUCAGgGCCGACCUUg -3'
miRNA:   3'- auaUC-UGCaCGCAGUCgCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 68254 0.66 0.845061
Target:  5'- gGUGGAUGcUGCGUCgcuGGCGCuCGGgCUg -3'
miRNA:   3'- aUAUCUGC-ACGCAG---UCGCG-GCUgGAg -5'
21351 3' -55.9 NC_004778.3 + 84726 0.68 0.761189
Target:  5'- --cAGACGUcgaauuccaaagccGCGaagCAGaCGUCGACCUCa -3'
miRNA:   3'- auaUCUGCA--------------CGCa--GUC-GCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 85509 0.67 0.836761
Target:  5'- cAUGGACGcggGCGUuugCGGCGgCGAUgUCa -3'
miRNA:   3'- aUAUCUGCa--CGCA---GUCGCgGCUGgAG- -5'
21351 3' -55.9 NC_004778.3 + 89127 0.74 0.441414
Target:  5'- --aAGACGcGCGUUucgccuGCGCCGAUCUCc -3'
miRNA:   3'- auaUCUGCaCGCAGu-----CGCGGCUGGAG- -5'
21351 3' -55.9 NC_004778.3 + 90386 0.74 0.432236
Target:  5'- uUGUGcACGUGCGUCAGCGCgGAgCa- -3'
miRNA:   3'- -AUAUcUGCACGCAGUCGCGgCUgGag -5'
21351 3' -55.9 NC_004778.3 + 94058 0.67 0.818709
Target:  5'- --cGGAUGUGCGUUauauacgAGCGCCGAa--- -3'
miRNA:   3'- auaUCUGCACGCAG-------UCGCGGCUggag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.